PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024978331.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C2H2
Protein Properties Length: 359aa    MW: 39623 Da    PI: 8.488
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024978331.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-05106126323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     C+ Cgk F +   L +H+r+H
  XP_024978331.1 106 CKQCGKGFLSLRALASHMRSH 126
                     ********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    
MEEEDQEQKC YVCKFCNQSF LNGKKLGGHM RGHLALISAT KKQSIKEHDQ EAINGGMSLE  60
FNDEMIKKKE DFGPNSYGLR ENPKKSWRVS VSGSKSKPNR SSDSICKQCG KGFLSLRALA  120
SHMRSHSLKS KESIKKNLCG KCGKCFDSVK ALYEDGKLDG GVKGEIANPI RRKRSCTRYK  180
PVKPNDPSSC NSLSSFASIC EDNGDEVEEG ALCLMMISRG IMGISKKEVM GQSGFGFGFG  240
SGQPIMDLTK NNPKSNSQHS PDKGKRKAFD ELCDTRRSKD HKCPICSKEF GSGQALGGHK  300
KAHCNMLIST ENGVKEDTDD SFDVHECLDH GHGIKNDGVE LKLTWVGNNI EWDPLLLVN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-14C2H2 family protein