PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024978271.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 239aa    MW: 27813.3 Da    PI: 7.5818
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024978271.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.14.9e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ eEd +l  +++++G  +W++ + + g+ R++k+c++rw +yl
   XP_024978271.1 14 KGAWSVEEDRKLTAYIQKYGIWNWSKMPPYAGLLRSGKSCRLRWMNYL 61
                     79******************99**********99************97 PP
2Myb_DNA-binding53.17.5e-1767110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T eE++ +++++  lG++ W++Ia +++ gRt++++k++w++
   XP_024978271.1  67 RGNFTVEEEKMILHYHSILGNK-WSAIATKLP-GRTDNEIKNHWHT 110
                      89********************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MKVSKWDMRS GLNKGAWSVE EDRKLTAYIQ KYGIWNWSKM PPYAGLLRSG KSCRLRWMNY  60
LKPNIKRGNF TVEEEKMILH YHSILGNKWS AIATKLPGRT DNEIKNHWHT RIKKQVCHKK  120
QVRHKKQEIE VQLPETKPVD LVTSNHYTES SVESLDHFLS SMSDDHSTSS YIFDTSSRFE  180
SRVEFQTGYN MSSPGTIEDV EGFWQQLCCN NGDFDFDLQS LLEDTCSNES IGCYSLHDV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.13e-48MYB family protein