PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024978135.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HD-ZIP
Protein Properties Length: 286aa    MW: 31262.1 Da    PI: 8.7503
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024978135.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.71.4e-16139194256
                     T--SS--HHHHHHHHHHHHHSSS--HH.HHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsae.ereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tk q   Lee+F+ +++++ + +++eLA++l+L  rqV vWFqNrRa+ k
  XP_024978135.1 139 RKKLRLTKAQSALLEEAFKHHSTLNPQkQKQELARELKLRPRQVEVWFQNRRARTK 194
                     678899******************9652899***********************98 PP
2HD-ZIP_I/II1162.1e-37139229191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLep.erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rl+k q++lLEe F+++++L+p ++K+elareL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk++++alkeen+rL+ke +eL+ +l
  XP_024978135.1 139 RKKLRLTKAQSALLEEAFKHHSTLNPqKQKQELARELKLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCEALKEENSRLHKELQELK-AL 229
                     69***********************94579**********************************************************9.54 PP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
MGFHGVSNKG LILELGLNST SSSSSILENN STTTKKPCST LSFQPSLTLS LSGDHATKTP  60
PPCVAGVGGN TGGEHGGGLY RQDSVSGGGS SFSVASVSVK REREVKSEDS EKASRVISRT  120
SVDDHEVEED DDDGSVNGRK KLRLTKAQSA LLEEAFKHHS TLNPQKQKQE LARELKLRPR  180
QVEVWFQNRR ARTKLKQTEV DCEYLKKCCE ALKEENSRLH KELQELKALK LSAHQSLYMQ  240
LPAATLTMCP SCERIGDTTS SAKSRPFNMA PKSHLFNPFS NPSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189197RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-69HD-ZIP family protein