PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024978133.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 480aa    MW: 54452.3 Da    PI: 6.2802
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024978133.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS307.14.2e-941004782374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      ++Lle+A+av++++  + ++l++ l+e++sp+gd  ++l +yf++AL +r+++s+++ y++l++ +++  + +++ + +  f+evsP+ +f+h+
  XP_024978133.1 100 SHVLLEAARAVADKNSCRLNQLIWMLNEISSPYGDIDEKLSSYFLQALFSRITDSGDRNYRILSSISEKMCTFETTRKLVLKFQEVSPWTTFGHV 194
                     589***********************************************************98888875555555555555************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlvak 184
                     + N  I+ea++ge+++HiiD + ++++QWp+Ll+a+a+R+ e++p+lR+T+v s++++       +  ++e+g+r++kfA+ +gvpf+fnv+++ 
  XP_024978133.1 195 ASNGVIMEAFDGETKLHIIDVSNTYCTQWPTLLEAIATRTtEETPHLRLTTVISSTPKsdgsdgIEMIMREIGNRMEKFARLMGVPFKFNVIHHM 289
                     ****************************************999*********99888788888777889**********************9665 PP

            GRAS 185 .rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsleak 274
                      +l+dl++++L+++++Eala+nl   l ++       +++rd ++++++s++Pk+v +ve+ead++ +    +Fl++f e+l+++ + f++l+++
  XP_024978133.1 290 gDLSDLNFSQLDIQSDEALAINLNGTLRSVS------NHRRDYLISMFRSMNPKIVMIVEEEADLDVGihgiEFLRGFQECLRWFRVYFEALDES 378
                     6************************999997......66799********************9986656677*********************** PP

            GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve..eesgslvlgWkdrpL 367
                     +p++s+er ++Ere  gr+++n+vac  a+++er+et+ +W+ rl+++GF+ v++s++  +++++llr++k +g+++   e  + ++l+ k+ ++
  XP_024978133.1 379 FPQTSNERLMLERE-AGRAVMNLVACPPANSVERRETADRWSCRLRASGFSGVSYSDEGCDDVRALLRRYK-EGWSMGrsETGAGIFLMRKETAV 471
                     **************.********************************************************.666655326677778******** PP

            GRAS 368 vsvSaWr 374
                     v++SaW+
  XP_024978133.1 472 VWASAWK 478
                     ******8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    
MDTMFTNVTL KHQQFISDHQ SFNSTLTSSG SSGSSAHDHH QTTTNHHHHQ QCFMEEASSS  60
SLMQQPHFHF HHQFPTSTAT ATHDVSLEFL ASFSTNGWAS HVLLEAARAV ADKNSCRLNQ  120
LIWMLNEISS PYGDIDEKLS SYFLQALFSR ITDSGDRNYR ILSSISEKMC TFETTRKLVL  180
KFQEVSPWTT FGHVASNGVI MEAFDGETKL HIIDVSNTYC TQWPTLLEAI ATRTTEETPH  240
LRLTTVISST PKSDGSDGIE MIMREIGNRM EKFARLMGVP FKFNVIHHMG DLSDLNFSQL  300
DIQSDEALAI NLNGTLRSVS NHRRDYLISM FRSMNPKIVM IVEEEADLDV GIHGIEFLRG  360
FQECLRWFRV YFEALDESFP QTSNERLMLE REAGRAVMNL VACPPANSVE RRETADRWSC  420
RLRASGFSGV SYSDEGCDDV RALLRRYKEG WSMGRSETGA GIFLMRKETA VVWASAWKPI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-177GRAS family protein