PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024978056.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MYB | ||||||||
Protein Properties | Length: 329aa MW: 37045.1 Da PI: 6.52 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.1 | 4.2e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv +v+q+G+g+W+ ++ g++R+ k+c++rw +yl XP_024978056.1 14 KGPWTPEEDIMLVSYVQQHGPGNWRQVPTNTGLRRCSKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 44.5 | 3.6e-14 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg + +E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l XP_024978056.1 67 RGDFNDDEEKMIIQLQALLGNK-WAAIASYLP-ERTDNDIKNYWNTHL 112 78999*****************.*********.************996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence |
MGRPPCCDKL GVKKGPWTPE EDIMLVSYVQ QHGPGNWRQV PTNTGLRRCS KSCRLRWTNY 60 LRPGIRRGDF NDDEEKMIIQ LQALLGNKWA AIASYLPERT DNDIKNYWNT HLKKKLRKLQ 120 TGAEEHDLIH NNKDRFSSST SSSSSSHCIS RGQWEKRLQT DIHMAKQALN DALSIDQKPT 180 FLPQTVKSST QTPIYPSSTD NIAKLLKGFM KNSPKNTKTS SNSSTRESSE VNALSSIESK 240 TSGIDLSEAF ESLFGFDQSF GSPNNSDFSQ SNTSPEGSIF QGDSKEELRF MMFENWLLDE 300 TAGAVGVVDQ GKEDLTNFSF DESPDFFDN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28910.1 | 6e-98 | MYB family protein |