PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024978003.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 388aa MW: 44112.2 Da PI: 9.8177

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024978003.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.2	1.2e-15	4	53	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd ll +v+q+G++ W++I+++m + R +k+c +rw +yl XP_024978003.1 4 RQRWQPEEDALLRAYVHQYGPREWNLISQRMSkpLDRDPKSCLERWKNYL 53 89**********************************************97 PP
2	Myb_DNA-binding	33.1	1.3e-10	59	103	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ T++E+ l + + +++G++ Wk+Ia++++ gRt+k + +w + XP_024978003.1 59 KGSLTPQEQSLVISLQAKYGNK-WKKIASEVP-GRTAKRLGKWWEVF 103 6788****************.*****.***999999766 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MKERQRWQPE EDALLRAYVH QYGPREWNLI SQRMSKPLDR DPKSCLERWK NYLKPGIKKG 60 SLTPQEQSLV ISLQAKYGNK WKKIASEVPG RTAKRLGKWW EVFKEKQIKQ QIQNHKKSGS 120 FTSNPPPPPP SVAVASGCCG SPERAVQGTY DHILETFAEK YVQPYLKPAV VMPNLNSPIL 180 SLGSGSTPQP EPNVSAPNML PPWMNNNNTT SCLTSSSSSK STTPSPSVSL TLSPSEPVVL 240 DPVHSDHPHP SRFFPVQQVG TLVQYCKEVE EAKQNWVQHK KEATWRLSRL EQQLEAEKSR 300 KRREKMEEIE AKIRCLREEE TAALGRMENE YREQLSALQR DADGKEVKLM ESWSNKQMKL 360 SKLVEQINGG LIQHQHMISG TNHHPGLS

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MKERQRWQPE EDALLRAYVH QYGPREWNLI SQRMSKPLDR DPKSCLERWK NYLKPGIKKG  60
SLTPQEQSLV ISLQAKYGNK WKKIASEVPG RTAKRLGKWW EVFKEKQIKQ QIQNHKKSGS  120
FTSNPPPPPP SVAVASGCCG SPERAVQGTY DHILETFAEK YVQPYLKPAV VMPNLNSPIL  180
SLGSGSTPQP EPNVSAPNML PPWMNNNNTT SCLTSSSSSK STTPSPSVSL TLSPSEPVVL  240
DPVHSDHPHP SRFFPVQQVG TLVQYCKEVE EAKQNWVQHK KEATWRLSRL EQQLEAEKSR  300
KRREKMEEIE AKIRCLREEE TAALGRMENE YREQLSALQR DADGKEVKLM ESWSNKQMKL  360
SKLVEQINGG LIQHQHMISG TNHHPGLS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	300	305	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37630.1	8e-58	MYB family protein