PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024977904.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NAC
Protein Properties Length: 305aa    MW: 35114.3 Da    PI: 6.2507
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024977904.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM181.71.8e-56131381128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+++yL +kv+++++++ ++i evd++kvePw+Lp ++k +e+ew+fF+ rd+ky+tg+r+nrat++gyWkatgkdke+++ 
  XP_024977904.1  13 LPPGFRFHPTDEELISHYLYPKVSDHTFSA-RAIGEVDLNKVEPWELPWRAKLGEQEWFFFCIRDRKYPTGSRTNRATDAGYWKATGKDKEIYK- 105
                     79**************************99.89***************888999****************************************. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +++lvg+kktLvfykgrapkgektdWvmheyrl
  XP_024977904.1 106 EKSLVGMKKTLVFYKGRAPKGEKTDWVMHEYRL 138
                     999****************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    
MDHKFDHEEH IELPPGFRFH PTDEELISHY LYPKVSDHTF SARAIGEVDL NKVEPWELPW  60
RAKLGEQEWF FFCIRDRKYP TGSRTNRATD AGYWKATGKD KEIYKEKSLV GMKKTLVFYK  120
GRAPKGEKTD WVMHEYRLDG KFSANNLPKS SKGEWVISRV FHKCAGGKKI PISGLSKDFG  180
SANLPPLMEI SSFEGGSSRT ETSHVTCFSE SMEEQKPNNQ ELVGSWSSSK TSLMASRNET  240
ANFPNPLVQN LDNFQYQDSI WMQDSSILKI LIESNNDSVM RQNPKTELVD DQDYGLNSDF  300
DLWNY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-111NAC family protein