PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024977738.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 304aa MW: 33012 Da PI: 8.0995

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024977738.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	63.4	4.6e-20	5	50	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++v+++G+++W+++++t++ gR++k+c++rw + XP_024977738.1 5 KGPWSPEEDEMLQQLVEKHGPRNWSLVSKTIP-GRSGKSCRLRWCNQ 50 79****************************.*********985 PP
2	Myb_DNA-binding	54.1	3.5e-17	59	101	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++eEde +++a++++G++ W+tIar + gRt++ +k++w++ XP_024977738.1 59 PFSPEEDETILRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 101 89****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence
MDRIKGPWSP EEDEMLQQLV EKHGPRNWSL VSKTIPGRSG KSCRLRWCNQ LSPEVEHRPF 60 SPEEDETILR AHARFGNKWA TIARLLSGRT DNAIKNHWNS TLKRKCSSMT NEEFNEFSIQ 120 QPSLKRSVSA GSAVPVSGLY LNPDSPSGSD VSDSSVPTIS STHVYRPVAR TAVVSDGRTP 180 PPPLNDPLTS LSLSLPGAES SESSSVTHPP PVPKPAIPSQ QVPAAISSAM QQLQVSQPPA 240 TEQQEKAAPP FSAEFISVMQ EMIRKEVRNY ITGVELQQPT NGGGDGGGFR SAAVGNRIGV 300 NKMD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	3e-72	MYB family protein