PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024977299.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 431aa MW: 48200.6 Da PI: 4.2737

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024977299.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	60.9	4.1e-19	2	49	80	128
NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +gyWkatgkd+ +++ ++ vg+kktLv+y+grap+g++tdWvmhey++ XP_024977299.1 2 NGYWKATGKDRIIKR-RSCSVGIKKTLVYYQGRAPSGQRTDWVMHEYTV 49 69*******9999.9999*************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence
MNGYWKATGK DRIIKRRSCS VGIKKTLVYY QGRAPSGQRT DWVMHEYTVD EEELKRCPFA 60 QEHYVLYKIF KKSGPGPKNG EQYGAPFVEE EWSDDDCLDV DALLVQKLNP IPVNDFRTGR 120 EEEETMLSSD IMEFLNKIID EPEILPPLPQ LLEEGQEFSP ESCSTKDDAF GFETPSGPSH 180 EQQDVQPRSE PQPLVVNEDF LEMDDLIGPE PSIHNFESFA FPNFDSFSEF DLYHDSTRFA 240 DTGSFGTQQI QLQAAFLDNV EYGTENSGLV SEVINHHHDE LPISYDLWEY DQGDSSIMTA 300 QTTHKAISQP SSGVVIEENP GKAEYCVNET NMDNGTSSWF SSALWAFVEA IPTTPASASE 360 SSALVNRAFE RMSSFGRGRN VNVAAAVGVS TSKRLEKKAS SSRGIVYFSV LGVLLAILWV 420 LVGTCMELLG R

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence

MNGYWKATGK DRIIKRRSCS VGIKKTLVYY QGRAPSGQRT DWVMHEYTVD EEELKRCPFA  60
QEHYVLYKIF KKSGPGPKNG EQYGAPFVEE EWSDDDCLDV DALLVQKLNP IPVNDFRTGR  120
EEEETMLSSD IMEFLNKIID EPEILPPLPQ LLEEGQEFSP ESCSTKDDAF GFETPSGPSH  180
EQQDVQPRSE PQPLVVNEDF LEMDDLIGPE PSIHNFESFA FPNFDSFSEF DLYHDSTRFA  240
DTGSFGTQQI QLQAAFLDNV EYGTENSGLV SEVINHHHDE LPISYDLWEY DQGDSSIMTA  300
QTTHKAISQP SSGVVIEENP GKAEYCVNET NMDNGTSSWF SSALWAFVEA IPTTPASASE  360
SSALVNRAFE RMSSFGRGRN VNVAAAVGVS TSKRLEKKAS SSRGIVYFSV LGVLLAILWV  420
LVGTCMELLG R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	12	17	RIIKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34190.1	2e-71	NAC family protein