PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024977298.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 526aa MW: 59276.2 Da PI: 4.5458

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024977298.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160.2	8e-50	25	144	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 ppGfrFhPtdeelv +yLk+k+ +++l+l ++i evd+yk++P++Lp ++++w+fFs+rd+ky++g r++rat +gyWkatgkd+ +++ + XP_024977298.1 25 PPGFRFHPTDEELVLYYLKRKICRRSLKL-DIIGEVDVYKWDPEELP-----GDRQWFFFSPRDRKYPNGGRSSRATMNGYWKATGKDRIIKR-R 112 9**************************.99***********.....899******************************9999.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 + vg+kktLv+y+grap+g++tdWvmhey++ XP_024977298.1 113 SCSVGIKKTLVYYQGRAPSGQRTDWVMHEYTV 144 999*************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence
MGSELIESVR VSKSKSSSSS GKFFPPGFRF HPTDEELVLY YLKRKICRRS LKLDIIGEVD 60 VYKWDPEELP GDRQWFFFSP RDRKYPNGGR SSRATMNGYW KATGKDRIIK RRSCSVGIKK 120 TLVYYQGRAP SGQRTDWVMH EYTVDEEELK RCPFAQEHYV LYKIFKKSGP GPKNGEQYGA 180 PFVEEEWSDD DCLDVDALLV QKLNPIPVND FRTGREEEET MLSSDIMEFL NKIIDEPEIL 240 PPLPQLLEEG QEFSPESCST KDDAFGFETP SGPSHEQQDV QPRSEPQPLV VNEDFLEMDD 300 LIGPEPSIHN FESFAFPNFD SFSEFDLYHD STRFADTGSF GTQQIQLQAA FLDNVEYGTE 360 NSGLVSEVIN HHHDELPISY DLWEYDQGDS SIMTAQTTHK AISQPSSGVV IEENPGKAEY 420 CVNETNMDNG TSSWFSSALW AFVEAIPTTP ASASESSALV NRAFERMSSF GRGRNVNVAA 480 AVGVSTSKRL EKKASSSRGI VYFSVLGVLL AILWVLVGTC MELLGR

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence

MGSELIESVR VSKSKSSSSS GKFFPPGFRF HPTDEELVLY YLKRKICRRS LKLDIIGEVD  60
VYKWDPEELP GDRQWFFFSP RDRKYPNGGR SSRATMNGYW KATGKDRIIK RRSCSVGIKK  120
TLVYYQGRAP SGQRTDWVMH EYTVDEEELK RCPFAQEHYV LYKIFKKSGP GPKNGEQYGA  180
PFVEEEWSDD DCLDVDALLV QKLNPIPVND FRTGREEEET MLSSDIMEFL NKIIDEPEIL  240
PPLPQLLEEG QEFSPESCST KDDAFGFETP SGPSHEQQDV QPRSEPQPLV VNEDFLEMDD  300
LIGPEPSIHN FESFAFPNFD SFSEFDLYHD STRFADTGSF GTQQIQLQAA FLDNVEYGTE  360
NSGLVSEVIN HHHDELPISY DLWEYDQGDS SIMTAQTTHK AISQPSSGVV IEENPGKAEY  420
CVNETNMDNG TSSWFSSALW AFVEAIPTTP ASASESSALV NRAFERMSSF GRGRNVNVAA  480
AVGVSTSKRL EKKASSSRGI VYFSVLGVLL AILWVLVGTC MELLGR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	112	RIIKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34190.1	1e-111	NAC family protein