PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024977297.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 533aa MW: 60019 Da PI: 4.6072

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024977297.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165	2.6e-51	25	151	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 ppGfrFhPtdeelv +yLk+k+ +++l+l ++i evd+yk++P++Lp + k+k+++++w+fFs+rd+ky++g r++rat +gyWkatgkd+ +++ XP_024977297.1 25 PPGFRFHPTDEELVLYYLKRKICRRSLKL-DIIGEVDVYKWDPEELPgQsKLKTGDRQWFFFSPRDRKYPNGGRSSRATMNGYWKATGKDRIIKR 118 9**************************.99**********963589999********************************9999 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ vg+kktLv+y+grap+g++tdWvmhey++ XP_024977297.1 119 -RSCSVGIKKTLVYYQGRAPSGQRTDWVMHEYTV 151 .9999*************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence
MGSELIESVR VSKSKSSSSS GKFFPPGFRF HPTDEELVLY YLKRKICRRS LKLDIIGEVD 60 VYKWDPEELP GQSKLKTGDR QWFFFSPRDR KYPNGGRSSR ATMNGYWKAT GKDRIIKRRS 120 CSVGIKKTLV YYQGRAPSGQ RTDWVMHEYT VDEEELKRCP FAQEHYVLYK IFKKSGPGPK 180 NGEQYGAPFV EEEWSDDDCL DVDALLVQKL NPIPVNDFRT GREEEETMLS SDIMEFLNKI 240 IDEPEILPPL PQLLEEGQEF SPESCSTKDD AFGFETPSGP SHEQQDVQPR SEPQPLVVNE 300 DFLEMDDLIG PEPSIHNFES FAFPNFDSFS EFDLYHDSTR FADTGSFGTQ QIQLQAAFLD 360 NVEYGTENSG LVSEVINHHH DELPISYDLW EYDQGDSSIM TAQTTHKAIS QPSSGVVIEE 420 NPGKAEYCVN ETNMDNGTSS WFSSALWAFV EAIPTTPASA SESSALVNRA FERMSSFGRG 480 RNVNVAAAVG VSTSKRLEKK ASSSRGIVYF SVLGVLLAIL WVLVGTCMEL LGR

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence

MGSELIESVR VSKSKSSSSS GKFFPPGFRF HPTDEELVLY YLKRKICRRS LKLDIIGEVD  60
VYKWDPEELP GQSKLKTGDR QWFFFSPRDR KYPNGGRSSR ATMNGYWKAT GKDRIIKRRS  120
CSVGIKKTLV YYQGRAPSGQ RTDWVMHEYT VDEEELKRCP FAQEHYVLYK IFKKSGPGPK  180
NGEQYGAPFV EEEWSDDDCL DVDALLVQKL NPIPVNDFRT GREEEETMLS SDIMEFLNKI  240
IDEPEILPPL PQLLEEGQEF SPESCSTKDD AFGFETPSGP SHEQQDVQPR SEPQPLVVNE  300
DFLEMDDLIG PEPSIHNFES FAFPNFDSFS EFDLYHDSTR FADTGSFGTQ QIQLQAAFLD  360
NVEYGTENSG LVSEVINHHH DELPISYDLW EYDQGDSSIM TAQTTHKAIS QPSSGVVIEE  420
NPGKAEYCVN ETNMDNGTSS WFSSALWAFV EAIPTTPASA SESSALVNRA FERMSSFGRG  480
RNVNVAAAVG VSTSKRLEKK ASSSRGIVYF SVLGVLLAIL WVLVGTCMEL LGR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	119	RIIKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34190.1	1e-118	NAC family protein