PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024977096.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 321aa    MW: 35241.9 Da    PI: 7.018
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024977096.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.71.4e-10163211355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  XP_024977096.1 163 NSHSLAERVRRERISERMKLLQDLVPGC----NKITGKAVMLDEIINYVQSLQ 211
                     58**************************....999*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
MASSEDNNGR EMGFQQRGEI SSGSMFPNKS SGGNLFGSGW DPIENYSGLL QHYQSGSFGN  60
GGFSEMVNPF MNPNPECSVQ RVSESASSPD RSDKRRAPHS STFNPIKNGD ASGDSSENVN  120
GQDEKKQKTH SRGKQIGKQA KDNSDSGKED YIHVRAKRGQ ATNSHSLAER VRRERISERM  180
KLLQDLVPGC NKITGKAVML DEIINYVQSL QQQVEFLSMK LATVNPELNI DIDHILSKDI  240
LNSRGNNSNL GFIQGLTSSQ HYSQGIMPVI PSTNPPFPPI HPQPVWDNDL HNLLQMGYDS  300
NSGINNLGDG NCSKATNTRG F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.11e-69bHLH family protein