PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024977071.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB_related

Protein Properties

Length: 422aa MW: 45438.9 Da PI: 7.3411

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024977071.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.2	9.1e-09	215	260	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwq 45 r++W+++Ed+ l av++ G g+W+ I + Rt+ q+ rw+ XP_024977071.1 215 RKPWSADEDKELFAAVQRCGEGNWANILKGDFkGDRTASQLSQRWN 260 789************************9842235999999999997 PP

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence
MQSQSQNIDS SSMADKSTTQ KRGGSISEDD VALVLQRYKA STVLDLLGEV YRFQDVQDVK 60 IDWNALVKQT KTGITNPREY QMLWRHLAYC DPLIDELEDD AQPMDDDSDL EYELEAFPTV 120 SNEASAEAAA CVKVLIDSGS SSDSCLEKGL TIEAPLTINI PNNKLENPQL GSSSYGINIT 180 IPVSVPKQTL PTVSSAEGLD TNGYANSNLP PRRKRKPWSA DEDKELFAAV QRCGEGNWAN 240 ILKGDFKGDR TASQLSQRWN IIKKRKSNSI IKMGSQLSEV QLAARRALNL ALDKPGADNS 300 KAASSLGSNL SVQPTVAEPS SAGALPQNQS QPDSKRAIPR SQPFPTRPSA KPLTSGPDAV 360 KAAAVAAGAR IATQSAAAAI LKAQLKSAIH IKTTTSGNTR PSPATHMAGE SGRQWTRCEY 420 SI

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence

MQSQSQNIDS SSMADKSTTQ KRGGSISEDD VALVLQRYKA STVLDLLGEV YRFQDVQDVK  60
IDWNALVKQT KTGITNPREY QMLWRHLAYC DPLIDELEDD AQPMDDDSDL EYELEAFPTV  120
SNEASAEAAA CVKVLIDSGS SSDSCLEKGL TIEAPLTINI PNNKLENPQL GSSSYGINIT  180
IPVSVPKQTL PTVSSAEGLD TNGYANSNLP PRRKRKPWSA DEDKELFAAV QRCGEGNWAN  240
ILKGDFKGDR TASQLSQRWN IIKKRKSNSI IKMGSQLSEV QLAARRALNL ALDKPGADNS  300
KAASSLGSNL SVQPTVAEPS SAGALPQNQS QPDSKRAIPR SQPFPTRPSA KPLTSGPDAV  360
KAAAVAAGAR IATQSAAAAI LKAQLKSAIH IKTTTSGNTR PSPATHMAGE SGRQWTRCEY  420
SI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	211	217	PRRKRKP
2	257	266	QRWNIIKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	8e-81	MYB_related family protein