PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024976952.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 622aa MW: 69692.1 Da PI: 6.533

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024976952.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95.3	5.7e-30	52	135	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+laL+++r++m+ ++r+++lk+plW+evs+k++e g++rs+k+Ckek+en+ k++k++keg+ ++ + +t+++fdql+ XP_024976952.1 52 RWPRQETLALLKIRSDMDVAFRDSSLKGPLWDEVSRKLAELGYHRSAKKCKEKFENVYKYHKRTKEGRTSK--ADGKTYRFFDQLQ 135 8******************************************************************96..66678****98 PP
2	trihelix	105.4	4e-33	438	523	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k e+ aLi++r+ ++++++++ k+plWee+s++mr+ g++r++k+Ckekwen+nk+ykk+ke++kkr +e+s+tcpyf+ql+a XP_024976952.1 438 RWPKAEINALIKLRTTLDTKYQESGPKGPLWEEISSAMRKLGYNRNAKRCKEKWENINKYYKKVKESSKKR-PEDSKTCPYFHQLDA 523 8*******************************************************************8.99*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 622 aa Download sequence
MMLQGEGIAD SGDADASASA SAAAAAELAA AGFSEEERAR IEEGGRNSGG NRWPRQETLA 60 LLKIRSDMDV AFRDSSLKGP LWDEVSRKLA ELGYHRSAKK CKEKFENVYK YHKRTKEGRT 120 SKADGKTYRF FDQLQALEAN PGGGSHQQPP PPPPLSLPPS KPPAMLNTSQ IPSTTVPSVV 180 TPINITHQNN VDPISVAAPA GAMNINHHVV GGFPFSHPNM LSASTNSTSS STSSDDEPPE 240 RRRNRKRKWK DFFGRLMKEV IDKQEELQSK FLDTLERRER DRMAREEAWR IQEMAKMKRE 300 HDLLVQERSM VAAKDAAVIT FLQKITEQNP NAAILQIPAM QLLQQQPPLP PPPPPPSQQM 360 PPMQQQPQPQ QQQQQQRQQQ VGPSQHQVQT MPIAVPVQVP VPVPVSVSVS EPAPQTSTVK 420 NLDNGGGGEN LLQPSPSRWP KAEINALIKL RTTLDTKYQE SGPKGPLWEE ISSAMRKLGY 480 NRNAKRCKEK WENINKYYKK VKESSKKRPE DSKTCPYFHQ LDAIYREKAS IKLPETQMAP 540 IMARPEQQWP LPATAVVVQE QQHLHQQPPQ QQSRTNESRD QNAEEDYDDE EDDDEEEEEE 600 EGGGGGEYEI FPNKTSSMAA VE

Sequence ? help Back to Top

Protein Sequence Length: 622 aa Download sequence

MMLQGEGIAD SGDADASASA SAAAAAELAA AGFSEEERAR IEEGGRNSGG NRWPRQETLA  60
LLKIRSDMDV AFRDSSLKGP LWDEVSRKLA ELGYHRSAKK CKEKFENVYK YHKRTKEGRT  120
SKADGKTYRF FDQLQALEAN PGGGSHQQPP PPPPLSLPPS KPPAMLNTSQ IPSTTVPSVV  180
TPINITHQNN VDPISVAAPA GAMNINHHVV GGFPFSHPNM LSASTNSTSS STSSDDEPPE  240
RRRNRKRKWK DFFGRLMKEV IDKQEELQSK FLDTLERRER DRMAREEAWR IQEMAKMKRE  300
HDLLVQERSM VAAKDAAVIT FLQKITEQNP NAAILQIPAM QLLQQQPPLP PPPPPPSQQM  360
PPMQQQPQPQ QQQQQQRQQQ VGPSQHQVQT MPIAVPVQVP VPVPVSVSVS EPAPQTSTVK  420
NLDNGGGGEN LLQPSPSRWP KAEINALIKL RTTLDTKYQE SGPKGPLWEE ISSAMRKLGY  480
NRNAKRCKEK WENINKYYKK VKESSKKRPE DSKTCPYFHQ LDAIYREKAS IKLPETQMAP  540
IMARPEQQWP LPATAVVVQE QQHLHQQPPQ QQSRTNESRD QNAEEDYDDE EDDDEEEEEE  600
EGGGGGEYEI FPNKTSSMAA VE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	242	248	RRNRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	9e-63	Trihelix family protein