PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_024976757.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 158aa MW: 17623 Da PI: 8.7146 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 199.3 | 1.6e-61 | 5 | 151 | 6 | 170 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100 s e+vCyv+CnfCntilavsvP +s++++vtvrCGhC++lls+n++ q+++ +++ +++++l+sn+ k + + ss XP_024976757.1 5 SFERVCYVHCNFCNTILAVSVPCSSMSSIVTVRCGHCANLLSLNISALLQTTTHHHN--------------HHQKQLSSNNDKAQFGGSGSSS-- 83 669*****************************************9988776655443..............2222222222222222222222.. PP YABBY 101 lsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 l ++ + +vp+ p+i PPekrqrvPsaynrfikeei+rikasnP+ishreafs+aaknWahfP+ihfgl XP_024976757.1 84 L-QSVEPQVPQ-TPAICPPEKRQRVPSAYNRFIKEEIKRIKASNPEISHREAFSMAAKNWAHFPHIHFGL 151 1.233456776.5679****************************************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 158 aa Download sequence |
MSLESFERVC YVHCNFCNTI LAVSVPCSSM SSIVTVRCGH CANLLSLNIS ALLQTTTHHH 60 NHHQKQLSSN NDKAQFGGSG SSSLQSVEPQ VPQTPAICPP EKRQRVPSAY NRFIKEEIKR 120 IKASNPEISH REAFSMAAKN WAHFPHIHFG LKLDETSK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G08465.1 | 3e-54 | YABBY family protein |