PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024976572.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 318aa    MW: 35361.7 Da    PI: 6.8293
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024976572.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.8e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd +l  ++ q+G+++W++I++  g+ R++k+c++rw +yl
   XP_024976572.1 14 KGQWTPEEDHKLSSYISQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYL 61
                     799*******************************************97 PP
2Myb_DNA-binding47.44.4e-1568110246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++  E++++v+++  lG++ W+ Ia+ ++ gRt++++k++w++
   XP_024976572.1  68 GQFSDAEEQIIVRLHSVLGNR-WSVIAAQLP-GRTDNDVKNHWNT 110
                      7899*****************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    
MGRIPCCEKE SVKKGQWTPE EDHKLSSYIS QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY  60
LRPDLKHGQF SDAEEQIIVR LHSVLGNRWS VIAAQLPGRT DNDVKNHWNT KLRKKLSGMG  120
IDPVTHKPYS HLMAEIANTL APPQVANLAE ATLGCLKDEM LHLLTKKHID IQFQSPAPAP  180
ATVNNNNNNN SKHEEHDDDT IEKIKIGLSR AIIQESPETR MTPSNKLPWE SSNGASSANF  240
PGFHYALPSF GHEGEGGSPW SQSMCTGSTC TAGEQLQSKM GVDENGDECS GEKDGRIMFS  300
GECELWDLPS NDLMNPLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.11e-112MYB family protein