PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024976133.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB_related
Protein Properties Length: 336aa    MW: 37598.1 Da    PI: 5.7032
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024976133.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-1371112346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++T++E+el+++++   G++ W  Ia+ ++ gRt++++k++w++
   XP_024976133.1  71 SFTPQEEELIIKLHSAIGSR-WPIIAQQLP-GRTDNDVKNYWNT 112
                      79******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MVRPLCCDKL GMRKGSWNEE EDAQMLAFVT KQPTGNWQVG APRKPGLRRC GKSCRIRKTN  60
VSRNDHVRHE SFTPQEEELI IKLHSAIGSR WPIIAQQLPG RTDNDVKNYW NTKLKKKLSA  120
MGIDPVTHRP FSQMLADYGN ISGLTRTQTR IASLNRDNNN NNNNKKINTF FISNQEIQQI  180
PETLFPNFNN SVKMEPSEVI KPDSLDLLTQ LQAITHVKDP STNPEISLTQ FHVSLASSSS  240
SSSSTCSATL NEATPQQTFN WRDFLIENSQ DGNVNDESFE AMGGIEVVKG NNTNTPLMKG  300
SVDEEGCDGS FVEAMLDGEN DMLLDFPGLL GEPVYY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.13e-57MYB family protein