PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024975862.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MYB | ||||||||
Protein Properties | Length: 287aa MW: 32349.2 Da PI: 6.9048 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.2 | 1.8e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTteEd +++ +v+ +G g+W++++++ g++R++k+c++rw +yl XP_024975862.1 15 KGPWTTEEDAKILAYVANHGIGNWTLVPQKAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.5 | 4.2e-15 | 70 | 111 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T+ E++l++++++ G++ W++Ia+ ++ gRt++++k++w++ XP_024975862.1 70 SFTAHEEDLILRYHQAIGSR-WSLIAKQLP-GRTDNDVKNHWNT 111 79******************.*********.***********97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence |
MGRRPPCCDK SHVKKGPWTT EEDAKILAYV ANHGIGNWTL VPQKAGLNRC GKSCRLRWTN 60 YLRPDLKHDS FTAHEEDLIL RYHQAIGSRW SLIAKQLPGR TDNDVKNHWN TKLKKKLSKM 120 GIDPITHKPF RQLLSDYGNI NEIIPKNTTI SDHRHHEPSD FSRADSSLTT MDPMNLLTAH 180 FQVINEAASS STSSPATKVQ VNLPSSPSIW SDYLIGDQEQ ECTNEPDLGI VSTNGENPNN 240 YNGLGVDQSK NTLEVASTSV SFVESILNRD REMQMDFPQL LDGYSEY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28470.1 | 4e-82 | MYB family protein |