PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_024975463.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 192aa MW: 22041.1 Da PI: 10.0466 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 135.5 | 3.5e-42 | 10 | 147 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 ++GfrF Pt+eel+++yLk+k++ ++ ++++vi+++++y++ PwdLp+ ++++e++w+fF++r++k+a+g r++r t+sgyWkatg+ XP_024975463.1 10 ARGFRFYPTEEELISFYLKHKLHCSNtsriQQIQRVIPQLHVYDFYPWDLPQyageFCDGDEEQWFFFVPRQEKEARGGRPSRLTSSGYWKATGS 104 68*******************999887776667778***************645543444788******************************** PP NAM 89 dkevlsk....kgelvglkktLvfykgrapkgektdWvmheyr 127 + v+s+ ++ ++g+k+t+vfykgrap+g+kt+W m+ey+ XP_024975463.1 105 SSIVYSSsssiSSGAIGIKRTMVFYKGRAPTGKKTEWKMNEYK 147 *****9866666666***************************8 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 192 aa Download sequence |
MDHGEGGVVA RGFRFYPTEE ELISFYLKHK LHCSNTSRIQ QIQRVIPQLH VYDFYPWDLP 60 QYAGEFCDGD EEQWFFFVPR QEKEARGGRP SRLTSSGYWK ATGSSSIVYS SSSSISSGAI 120 GIKRTMVFYK GRAPTGKKTE WKMNEYKAFK KEASSKANSR PKLMQEFSLC RLYIKSKCLR 180 AFDRRPSGVG IS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G22380.1 | 1e-63 | NAC family protein |