PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024974986.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 581aa    MW: 64684.5 Da    PI: 4.6261
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024974986.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS366.14.9e-1122155812374
            GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilkfs 94 
                      ++L++cA+ +++ d  +a + L rl++  ++ +gdp++R+a+yf+eAL++r+++         +p++t+++   +e +  +k++++++P+ kf+
  XP_024974986.1 215 LKTLTDCAR-IADTDPGKAIKPLIRLRDSvSADHGDPTERVAFYFAEALHSRVTQ---------KPRTTADMAsPEEFTLTYKALNDACPYSKFA 299
                     6789****9.7777999999999999999556677********************.........4555554442566778999************ PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                     hltaNqaIlea+e++er+Hi+Df+i qG+QW+aLlqaLa+Rp+g+p ++Ri g+ +   g   + el +tg+rL++fA+ l+++fef++ + + +
  XP_024974986.1 300 HLTANQAILEATEKAERIHIVDFGIVQGVQWAALLQALATRPAGKPtHIRISGIPALILGdsPASELLATGNRLREFAKVLDLNFEFEP-ILTPI 393
                     ******************************************77666*********877788999************************.799** PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                     e+l+++++ v+p+E laVn++lql++llde+    +   + Lkl ksl+P +v++ e ea++n+  Fl+rf +al+yysa+fdsle ++ r+s +
  XP_024974986.1 394 EELNVSSFWVDPDEFLAVNFMLQLYNLLDENSGAVE---KALKLAKSLNPSIVTLGEYEASLNRVGFLQRFNNALNYYSAVFDSLEPNMTRDSPD 485
                     ****************************98877777...8******************************************************* PP

            GRAS 282 rikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaW 373
                     r  vEr l+gr+i  +v  e++  +rer+e +e+Wr+ +e++GF++v++s++a++qak ll  ++ sd y++ +++  ++ l W+d pL++vS+W
  XP_024974986.1 486 RLQVERSLFGRRIAAAVGPEEEGnKRERMEDKEQWRMTMENSGFETVNFSNYAVSQAKILLWSYNySDMYNLIDSDPGFLsLAWNDVPLLTVSSW 580
                     *****************98876559****************************************9*****9988877777************** PP

            GRAS 374 r 374
                     r
  XP_024974986.1 581 R 581
                     8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    
MAYMCTDSGN LMAIAQQVIQ QKQQQEQQLH QQQQHQQPIV TVNPFWNTTT HQSPAMGYGF  60
SDPFEGGAAD VTGGEETAGF QFPNLDHHHH HQSGFRFADF VAASGSVGEF DTDEWMESLI  120
DSTTESSTWQ PSSDFTLYAA DPFSDCPSRL ACPTDLKNGN STWAPPPAVL TSDHLIPPEE  180
KELKPPKLEK APPPSSKQDV ASTSSPERIL TKPLLKTLTD CARIADTDPG KAIKPLIRLR  240
DSVSADHGDP TERVAFYFAE ALHSRVTQKP RTTADMASPE EFTLTYKALN DACPYSKFAH  300
LTANQAILEA TEKAERIHIV DFGIVQGVQW AALLQALATR PAGKPTHIRI SGIPALILGD  360
SPASELLATG NRLREFAKVL DLNFEFEPIL TPIEELNVSS FWVDPDEFLA VNFMLQLYNL  420
LDENSGAVEK ALKLAKSLNP SIVTLGEYEA SLNRVGFLQR FNNALNYYSA VFDSLEPNMT  480
RDSPDRLQVE RSLFGRRIAA AVGPEEEGNK RERMEDKEQW RMTMENSGFE TVNFSNYAVS  540
QAKILLWSYN YSDMYNLIDS DPGFLSLAWN DVPLLTVSSW R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein