PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024974338.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 381aa MW: 41495.4 Da PI: 9.8684

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024974338.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.3	3.5e-18	16	61	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd+ l ++v ++G+++W++I + ++ gR++k+c++rw + XP_024974338.1 16 KGPWSPEEDDMLQQLVDKHGPRNWSLIGKSIP-GRSGKSCRLRWCNQ 61 79****************************.*********985 PP
2	Myb_DNA-binding	54.3	3.2e-17	70	112	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde +++a++++G++ W+tIar + gRt++ +k++w++ XP_024974338.1 70 AFTEEEDETILRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 112 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MFMACSNPKK DIDRIKGPWS PEEDDMLQQL VDKHGPRNWS LIGKSIPGRS GKSCRLRWCN 60 QLSPQVEHRA FTEEEDETIL RAHARFGNKW ATIARLLSGR TDNAIKNHWN STLKRKCSSM 120 TNEEFNEFSI QQPSLKRSVS AGSAVPVSGR YFNPGSPSGS DVSDSSVAAI SSSHVYRPVA 180 RSGAVVTSQI EVATSSPPPP PPPPLPKDPP TLLSLSLPGV EPKESTSTAT PMLLMPPKPV 240 ASQLPPPPPP PPPPIPIQAM PLRQVPIDRQ QNLSLNNTDL MSSIPMAIST AMLQLKVSRD 300 PVAAVGQPEK SFTPFSAEFL SVMQEMIRTE VRNYMTTVEQ HNPQQRSGDG GGMCMKQAAS 360 GVGEGFRNKA VVKRIGISKI D

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MFMACSNPKK DIDRIKGPWS PEEDDMLQQL VDKHGPRNWS LIGKSIPGRS GKSCRLRWCN  60
QLSPQVEHRA FTEEEDETIL RAHARFGNKW ATIARLLSGR TDNAIKNHWN STLKRKCSSM  120
TNEEFNEFSI QQPSLKRSVS AGSAVPVSGR YFNPGSPSGS DVSDSSVAAI SSSHVYRPVA  180
RSGAVVTSQI EVATSSPPPP PPPPLPKDPP TLLSLSLPGV EPKESTSTAT PMLLMPPKPV  240
ASQLPPPPPP PPPPIPIQAM PLRQVPIDRQ QNLSLNNTDL MSSIPMAIST AMLQLKVSRD  300
PVAAVGQPEK SFTPFSAEFL SVMQEMIRTE VRNYMTTVEQ HNPQQRSGDG GGMCMKQAAS  360
GVGEGFRNKA VVKRIGISKI D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	4e-71	MYB family protein