PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024974190.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 296aa    MW: 33323.4 Da    PI: 9.8241
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024974190.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.6e-083174445
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     WT+ E +l+ +a +++ ++   +W ++a++++ g+t  ++   + 
   XP_024974190.1 31 WTPAENKLFENALAKFDNDtpdRWQRVAEMVP-GKTVADVMRQYK 74
                     ********************************.****99988775 PP
2Myb_DNA-binding46.48.9e-15145189347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r    +Rt+ q+ s+ qky
   XP_024974190.1 145 PWTEEEHKLFLLGLKKYGKGDWRNISRNYVVTRTPTQVASHAQKY 189
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MKWETEILSP SSYISNSSSW VMEDSLKSTI WTPAENKLFE NALAKFDNDT PDRWQRVAEM  60
VPGKTVADVM RQYKELEDDV SNIEAGFYPK YRYNNSTSPF TLEWVNNHGF DMSKSPPYAA  120
GGKRFPVAVV AAGRPVEQER KKGVPWTEEE HKLFLLGLKK YGKGDWRNIS RNYVVTRTPT  180
QVASHAQKYF IRQLSGGKDK RRASIHDITT VNLTENQNPL PKNKRTSPEQ CQWNQPNGGG  240
GGAAMAFNQT NVFNSPRYRG NGGFRMGGGG GGLHEFYGGA QSMVFQMQPA MHYPHG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-74MYB_related family protein