PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024973973.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 234aa MW: 26447.2 Da PI: 6.5246 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89 | 2.6e-28 | 16 | 66 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKAeELSvLCda+va+iifsstgkl+ yss XP_024973973.1 16 KKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFHYSS 66 68***********************************************96 PP | |||||||
2 | K-box | 50.8 | 7e-18 | 99 | 179 | 19 | 99 |
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++akL ke+ + ++R+l Ge+L+ L ++eL+qLe+ Le +l ++ +kK e+++++i++lq+k +l een +Lr+++ XP_024973973.1 99 ANYAKLSKEVAERTLQLRRLRGEELHLLGIEELHQLEKSLEAGLGRVVTKKGEVIMNEISRLQEKGVQLMEENDRLRQEMV 179 6799******9999999*************************************************************975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence |
MCASGLMMAR EKIQIKKIDN ATARQVTFSK RRRGLFKKAE ELSVLCDADV ALIIFSSTGK 60 LFHYSSSSMK EILERHSLHS KNLEKLDQPS LELQLVEDAN YAKLSKEVAE RTLQLRRLRG 120 EELHLLGIEE LHQLEKSLEA GLGRVVTKKG EVIMNEISRL QEKGVQLMEE NDRLRQEMVE 180 ISNARKQIHT DAENVIGEED QSSESVANIC NSAGPSQDYE SSYTSLKLGL PYRG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 2e-89 | MIKC_MADS family protein |