PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024973507.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | Trihelix | ||||||||
Protein Properties | Length: 259aa MW: 31347.5 Da PI: 8.3598 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 81.1 | 1.5e-25 | 12 | 94 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ qe+++L+ +r e+++++ ++k++kplWe vs+km+erg++rs +qCk+kw+n+ +ryk +++e+++ ++++p++++l+ XP_024973507.1 12 QWSIQETRDLLMIRGELDSTFMETKRNKPLWEVVSAKMKERGYNRSVEQCKSKWKNILTRYKGYETIEEEG---MRQQFPFYKELQ 94 7********************************************************************97...56679*****98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence |
MSEGGGGDRF PQWSIQETRD LLMIRGELDS TFMETKRNKP LWEVVSAKMK ERGYNRSVEQ 60 CKSKWKNILT RYKGYETIEE EGMRQQFPFY KELQAIFTNR MQRILWMEAE GIPSESNKRG 120 MWFLSDEEDE NEDRLVEKAN YSGKKKQKAI ESSTSSRGNS DNTNNGTINN LKEVLEEYMK 180 RQMDIEMQWM KRYDAKEEER RMKEMEWRQT METLEKERIM LDKQWREREE QRRKREEARI 240 EKRDSLITTL LEKLRSQGL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 226 | 235 | REREEQRRKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38250.1 | 7e-57 | Trihelix family protein |