PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024973078.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 167aa MW: 18866.3 Da PI: 9.3731

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024973078.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.1	1e-05	13	64	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + +E++RR ++++ +L +++P++s++p k + + YIk+Lq XP_024973078.1 13 ERKTIEKNRRIHMKNLCYKLTSVVPSLSSQPYKCFPQDSLFDQSAAYIKQLQ 64 5689**********************87777666888888888888888887 PP

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence
MMKKYDGGSR KLERKTIEKN RRIHMKNLCY KLTSVVPSLS SQPYKCFPQD SLFDQSAAYI 60 KQLQNRIEQL KEKRDATSRL LNNGTRNDPS CYDQPAVSCD GVRLPTVEVK EFDDGLQVNL 120 TSGSERNFTF SDVVRIVEDG GAEVVKSGYT TVGGKVFYTL HAQNSSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	1e-23	bHLH family protein