PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024973022.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 423aa MW: 49585.5 Da PI: 6.845

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024973022.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	74.9	1.4e-23	105	202	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +W++ +v++Li+a+++++e+ + +kk++W++vsk+m+erg +sp+qC++k+++lnkryk+++e+ +++ ++e++++ +++d XP_024973022.1 105 KWSDPMVRLLITAVSYIGEDAAMEYgggsrrkysnlQKKGKWKSVSKVMAERGHFVSPQQCEDKFNDLNKRYKRLNEILGRGtSCEVVENPSLLD 199 7************888777753222345566777******************************************669****9999 PP trihelix 84 qle 86 ++ XP_024973022.1 200 LMD 202 997 PP

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence
MRAHHQQHNN PFTLNQHQHH HHLQSSRQQG SMVHPSIHEN LPLRMGMMQD CDRHNPTISL 60 ADFGKGERGK SCVSDEDEPS FAEDGHENRN DDNRGKNMSP WQRVKWSDPM VRLLITAVSY 120 IGEDAAMEYG GGSRRKYSNL QKKGKWKSVS KVMAERGHFV SPQQCEDKFN DLNKRYKRLN 180 EILGRGTSCE VVENPSLLDL MDHVSDKAKE EVRKILSSKH LYYEEMCSYH NGNRLHLPPD 240 PELQRSLRLA LRARDDHESN DGRRGSHEDL DEDDQDPYMD DHDDYEDHHH GLQLDQRAVY 300 GLGEGSTKRV KQCEGHDLVC NKNFGSQPKN VQADMNQALP EGVKANLLQD QWMKHRLVQL 360 EEQKLHIQAQ MLELEKERFK WQRFRRKKDR ELEMMKMENE RMKLENEQMA LELKRKEMCA 420 DLN

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence

MRAHHQQHNN PFTLNQHQHH HHLQSSRQQG SMVHPSIHEN LPLRMGMMQD CDRHNPTISL  60
ADFGKGERGK SCVSDEDEPS FAEDGHENRN DDNRGKNMSP WQRVKWSDPM VRLLITAVSY  120
IGEDAAMEYG GGSRRKYSNL QKKGKWKSVS KVMAERGHFV SPQQCEDKFN DLNKRYKRLN  180
EILGRGTSCE VVENPSLLDL MDHVSDKAKE EVRKILSSKH LYYEEMCSYH NGNRLHLPPD  240
PELQRSLRLA LRARDDHESN DGRRGSHEDL DEDDQDPYMD DHDDYEDHHH GLQLDQRAVY  300
GLGEGSTKRV KQCEGHDLVC NKNFGSQPKN VQADMNQALP EGVKANLLQD QWMKHRLVQL  360
EEQKLHIQAQ MLELEKERFK WQRFRRKKDR ELEMMKMENE RMKLENEQMA LELKRKEMCA  420
DLN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	376	388	KERFKWQRFRRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-130	Trihelix family protein