PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024973021.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 450aa MW: 52215.3 Da PI: 6.7047

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024973021.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	74.7	1.5e-23	132	229	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +W++ +v++Li+a+++++e+ + +kk++W++vsk+m+erg +sp+qC++k+++lnkryk+++e+ +++ ++e++++ +++d XP_024973021.1 132 KWSDPMVRLLITAVSYIGEDAAMEYgggsrrkysnlQKKGKWKSVSKVMAERGHFVSPQQCEDKFNDLNKRYKRLNEILGRGtSCEVVENPSLLD 226 7************888777753222345566777******************************************669****9999 PP trihelix 84 qle 86 ++ XP_024973021.1 227 LMD 229 997 PP

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence
MEGNLSSGNM ISGQTGSSYG GLDLQGSMRA HHQQHNNPFT LNQHQHHHHL QSSRQQGSMV 60 HPSIHENLPL RMGMMQDCDR HNPTISLADF GKGERGKSCV SDEDEPSFAE DGHENRNDDN 120 RGKNMSPWQR VKWSDPMVRL LITAVSYIGE DAAMEYGGGS RRKYSNLQKK GKWKSVSKVM 180 AERGHFVSPQ QCEDKFNDLN KRYKRLNEIL GRGTSCEVVE NPSLLDLMDH VSDKAKEEVR 240 KILSSKHLYY EEMCSYHNGN RLHLPPDPEL QRSLRLALRA RDDHESNDGR RGSHEDLDED 300 DQDPYMDDHD DYEDHHHGLQ LDQRAVYGLG EGSTKRVKQC EGHDLVCNKN FGSQPKNVQA 360 DMNQALPEGV KANLLQDQWM KHRLVQLEEQ KLHIQAQMLE LEKERFKWQR FRRKKDRELE 420 MMKMENERMK LENEQMALEL KRKEMCADLN

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence

MEGNLSSGNM ISGQTGSSYG GLDLQGSMRA HHQQHNNPFT LNQHQHHHHL QSSRQQGSMV  60
HPSIHENLPL RMGMMQDCDR HNPTISLADF GKGERGKSCV SDEDEPSFAE DGHENRNDDN  120
RGKNMSPWQR VKWSDPMVRL LITAVSYIGE DAAMEYGGGS RRKYSNLQKK GKWKSVSKVM  180
AERGHFVSPQ QCEDKFNDLN KRYKRLNEIL GRGTSCEVVE NPSLLDLMDH VSDKAKEEVR  240
KILSSKHLYY EEMCSYHNGN RLHLPPDPEL QRSLRLALRA RDDHESNDGR RGSHEDLDED  300
DQDPYMDDHD DYEDHHHGLQ LDQRAVYGLG EGSTKRVKQC EGHDLVCNKN FGSQPKNVQA  360
DMNQALPEGV KANLLQDQWM KHRLVQLEEQ KLHIQAQMLE LEKERFKWQR FRRKKDRELE  420
MMKMENERMK LENEQMALEL KRKEMCADLN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	403	415	KERFKWQRFRRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-138	Trihelix family protein