PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024972998.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 647aa MW: 71423.9 Da PI: 6.3217

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024972998.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.7	1.8e-29	59	141	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+kqe+laLi++r++m+ ++r+++lk+plW++vs+k++e gf+rs+k+C+ek+en+ k+++++keg+ ++ s +t+++fdql+ XP_024972998.1 59 RWPKQETLALIKIRSDMDAAFRDSNLKGPLWDDVSRKLSELGFHRSAKKCREKFENVYKYHRRTKEGRTSK---SDKTYRFFDQLQ 141 8*****************************************************************985...55679***98 PP
2	trihelix	103.1	2.1e-32	420	505	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k e+ aLi +r++++ +++++ k+plWe++s++mr+ g++r++k+Ckekwen+nk+ykk+keg+kkr +e+s+tcpyf+ql+a XP_024972998.1 420 RWPKAEINALISLRTQLDIKYQENVPKGPLWEDISAAMRKLGYNRNAKRCKEKWENINKYYKKMKEGNKKR-PEDSKTCPYFHQLDA 505 8*******************************************************************8.99*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 647 aa Download sequence
MEGVPATIGS SGDDGLSAQA QQQPAQAQAQ AHVNGGGGGG DDGGSIAGEE GDRNSGGNRW 60 PKQETLALIK IRSDMDAAFR DSNLKGPLWD DVSRKLSELG FHRSAKKCRE KFENVYKYHR 120 RTKEGRTSKS DKTYRFFDQL QALEASPRGA FPPPLAAVKP PPIFMGMSNN ATTHPLPVTV 180 PSFNLTGSDQ NNVSPISVAA PAGMVVPPLP AMNHKRSFPF PQPNMSGSTN SDESYTSSDE 240 EPPRKKRKWQ EFFGKLMNEV IEKQEELQMK FLDTLDRRER DRVAREEAWR AQEIAKMNQE 300 HERLVKERSI AAAKDAAVVT FLQKMTGKTP DVGAFPTIQQ HQHQQQQQQI QKSPPPHHQV 360 LPPVAVAIPV SGPPPPQTAI PVAPPTIQAA PQTIPSVAQP MVKNLGGGGG ESMLLPSPSR 420 WPKAEINALI SLRTQLDIKY QENVPKGPLW EDISAAMRKL GYNRNAKRCK EKWENINKYY 480 KKMKEGNKKR PEDSKTCPYF HQLDAIYSEK ANNNSETKMT AIVARPEQQW PPAATVAVQE 540 KAPTPQQQPS TDAVYMDKSA NNLAFTVKPE TQITPVAAWP QQQWLLPTAV QETPRQPPQQ 600 QLSTAGADDQ GSGNDDDYDD DEDEDEDEDE DGGDEIVPNK MSSMAAV

Sequence ? help Back to Top

Protein Sequence Length: 647 aa Download sequence

MEGVPATIGS SGDDGLSAQA QQQPAQAQAQ AHVNGGGGGG DDGGSIAGEE GDRNSGGNRW  60
PKQETLALIK IRSDMDAAFR DSNLKGPLWD DVSRKLSELG FHRSAKKCRE KFENVYKYHR  120
RTKEGRTSKS DKTYRFFDQL QALEASPRGA FPPPLAAVKP PPIFMGMSNN ATTHPLPVTV  180
PSFNLTGSDQ NNVSPISVAA PAGMVVPPLP AMNHKRSFPF PQPNMSGSTN SDESYTSSDE  240
EPPRKKRKWQ EFFGKLMNEV IEKQEELQMK FLDTLDRRER DRVAREEAWR AQEIAKMNQE  300
HERLVKERSI AAAKDAAVVT FLQKMTGKTP DVGAFPTIQQ HQHQQQQQQI QKSPPPHHQV  360
LPPVAVAIPV SGPPPPQTAI PVAPPTIQAA PQTIPSVAQP MVKNLGGGGG ESMLLPSPSR  420
WPKAEINALI SLRTQLDIKY QENVPKGPLW EDISAAMRKL GYNRNAKRCK EKWENINKYY  480
KKMKEGNKKR PEDSKTCPYF HQLDAIYSEK ANNNSETKMT AIVARPEQQW PPAATVAVQE  540
KAPTPQQQPS TDAVYMDKSA NNLAFTVKPE TQITPVAAWP QQQWLLPTAV QETPRQPPQQ  600
QLSTAGADDQ GSGNDDDYDD DEDEDEDEDE DGGDEIVPNK MSSMAAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	4e-60	Trihelix family protein