PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024972892.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | NAC | ||||||||
Protein Properties | Length: 261aa MW: 29989.7 Da PI: 9.8377 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 133.4 | 1.6e-41 | 30 | 162 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrF+Ptd+e+v +yL +kv + +l++ ++i+e+ +i+k++Pwd+p + e+e yfFsk++ ky +g+r nr ++gyWkatg dk++++ XP_024972892.1 30 LPPGFRFQPTDQEIVFQYLVRKVFSCPLPA-SIIPEIvNICKFNPWDFPGE---WEQERYFFSKKEAKYGHGNRVNRRSSDGYWKATGFDKHITR 120 79****************************.6787777***********44...46799***********************************9 PP NAM 95 k.........kgelvglkktLvfykgrapkgektdWvmheyrl 128 k++ +g+kktLvfy +++p++++t+W+mheyrl XP_024972892.1 121 CcgnnsssrkKDTITGMKKTLVFY-KTNPSTTRTHWIMHEYRL 162 87766655444444**********.6788889*********98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence |
MSIEDNKRAE NPKNGVKEKL SFVRDGSIKL PPGFRFQPTD QEIVFQYLVR KVFSCPLPAS 60 IIPEIVNICK FNPWDFPGEW EQERYFFSKK EAKYGHGNRV NRRSSDGYWK ATGFDKHITR 120 CCGNNSSSRK KDTITGMKKT LVFYKTNPST TRTHWIMHEY RLVHSPPSPT TTSNDKKSWI 180 QMGNWVLCHV LLNKRSRKPI EDDNGKKSDS TERQDLTRND TNYKPASSSY SSSSSCGSSV 240 VTLEVSSTKN QFDHEETNNV V |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.1 | 2e-58 | NAC family protein |