PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024972843.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MYB | ||||||||
Protein Properties | Length: 227aa MW: 25118.9 Da PI: 8.9161 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.7 | 1.1e-17 | 31 | 76 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v +G+++W++I++++ gR++k+c++rw + XP_024972843.1 31 KGPWSAEEDRILTRLVDTYGPRNWSLISKYIK-GRSGKSCRLRWCNQ 76 79*****************************9.***********985 PP | |||||||
2 | Myb_DNA-binding | 55 | 1.9e-17 | 85 | 127 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ed+ ++ a++q+G++ W+tIar ++ gRt++ +k++w++ XP_024972843.1 85 PFSAAEDQTILAAHAQYGNR-WATIARLLP-GRTDNAVKNHWNST 127 79******************.*********.***********986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence |
MESFNRCSSA TSSSSDSSDC SHSARKIDKI KGPWSAEEDR ILTRLVDTYG PRNWSLISKY 60 IKGRSGKSCR LRWCNQLSPN VQHRPFSAAE DQTILAAHAQ YGNRWATIAR LLPGRTDNAV 120 KNHWNSTLKR RQSFVTQTSR SESEKEFLSF GTAHMSPGSV SNGDAAADVD DPMTTLSLAP 180 PGMGGYESAE KRTENVPAGF WDVMKGVIAR EVRDYVTSSF PETSGFQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 3e-59 | MYB family protein |