PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024972815.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MYB | ||||||||
Protein Properties | Length: 314aa MW: 35150.3 Da PI: 7.4133 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.4 | 1.2e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++q G+g+W++++ g+ R+ k+c++rw +yl XP_024972815.1 14 KGPWTPEEDIILVSYIQQNGPGNWRSVPTNTGLMRCSKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.9 | 1.5e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +Ed ++++ ++lG++ W++Ia++++ Rt++++k++w+++l XP_024972815.1 67 RGNFTDQEDNMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89********************.*********.************996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence |
MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ QNGPGNWRSV PTNTGLMRCS KSCRLRWTNY 60 LRPGIKRGNF TDQEDNMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLSSNS 120 DQENHHHHHG ASTSSSSSGA TTIAKGQWER KLQTDIHKAK QALTEALSLD NKSTTSWQQH 180 QQPPQTTTIP PIHHQPVVLP PPPVNFTATT YALSAENIAR MLPNWLKNSP KSSQTSSESL 240 GPLNHQFPSP PASDHGFKNY SNSEVSETTS FFQDESKPEM PSLSFLEKCL VDDAAAQGHE 300 GLMNMCLEEN DDLF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62470.2 | 1e-100 | MYB family protein |