PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024972764.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 311aa    MW: 36059.8 Da    PI: 8.8845
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024972764.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.47.1e-181863147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+++G+ +W++Ia++++ gR++k+c++rw++ 
   XP_024972764.1 18 RGHWRPAEDEKLRQLVERYGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 63
                     899*****************************.***********996 PP
2Myb_DNA-binding58.51.5e-1870113146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l+ a++ +G++ W++I+r ++ gRt++ +k++w+ 
   XP_024972764.1  70 RRPFTEEEEERLLAAHRVHGNR-WALISRLFP-GRTDNAVKNHWHV 113
                      679*******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MEENGGGGSS DDTRTCPRGH WRPAEDEKLR QLVERYGPQN WNSIAEKLQG RSGKSCRLRW  60
FNQLDPRINR RPFTEEEEER LLAAHRVHGN RWALISRLFP GRTDNAVKNH WHVIMARKQR  120
EKSKLCDKRR YHDDLHSRNP NIDQELHQRD TNSKKYSTSI SFATSYSHFM QFQNLNKDGI  180
SSWSFASPTT MLAANRSPSS GDLTTDCFSS RMHHHSLSDH FTSRNYLSSN GGYRDTSAYG  240
HQFHNRVHFS NPIENSHETV LKRQLVSSEN NLPMPVRSTA IFEQHKEEEE EAIKHKDEVP  300
FIDFLGVGLS S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.12e-67MYB family protein