PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024972759.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NF-YA
Protein Properties Length: 313aa    MW: 34198.8 Da    PI: 9.1846
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024972759.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.32.1e-32184240158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     dep+YVNaKQy++Il+RRq Rakle+++kl +k rkpylheSRh hAl+R+Rg+gGrF
  XP_024972759.1 184 DEPIYVNAKQYNAILRRRQYRAKLEAQNKL-AKPRKPYLHESRHVHALKRARGPGGRF 240
                     79****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
MQELVKNNSD PRDLRSGAPS MVGYPSQWTG AESFVEQSTL SNNLSLKMGS STPRHQNTKQ  60
LGLQFQFQDQ DSSSTQSTCQ SYPEVASAGD YGENKFSIQS GYNGTHVSHE EGSVGSALPI  120
GPQDYAFASQ GDRRQPYACI PVLCPDPYYR GLLAPYGSQT MLPHPQAMRV ISTRVPLPLG  180
FAQDEPIYVN AKQYNAILRR RQYRAKLEAQ NKLAKPRKPY LHESRHVHAL KRARGPGGRF  240
LNVKKIQESQ PDGSINGQEG GGGGGGGGTC SDITSASNGD NFVHQQDHRF SIYHSHVGGG  300
PTYTGGSTHH MFR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.11e-43NF-YA family protein