PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024972476.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 272aa MW: 29804.4 Da PI: 8.6251

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024972476.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.9	6.3e-20	12	57	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEdell +v+++G ++W+ I++ ++ gR++k+c++rw + XP_024972476.1 12 KGPWSPEEDELLQALVHKHGARNWSVISKSIP-GRSGKSCRLRWCNQ 57 79****************************.*********985 PP
2	Myb_DNA-binding	57.3	3.6e-18	66	108	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T++Ede++++a++++G++ W+tIar ++ gRt++ +k++w++ XP_024972476.1 66 AFTADEDEKIIKAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 108 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence
MAVAKKDMDR IKGPWSPEED ELLQALVHKH GARNWSVISK SIPGRSGKSC RLRWCNQLSP 60 QVEHRAFTAD EDEKIIKAHA RFGNKWATIA RLLNGRTDNA IKNHWNSTLK RKCSSMSNDD 120 FSFLDGQDLV NYQPALKRSA SVGPDTTGSR FYLNPNSPTG SDLSDSSQRN GASTPPPVLN 180 DPPTSLSLSL PGSGSGSGSD LESRSELKVK LPQPPQSDGA NYGFFNPELM AVMQEMIKNE 240 VRHYMSGMEK NGQCLQGEGA ISSALTNRMG VE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	8e-82	MYB family protein