PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024972462.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MYB | ||||||||
Protein Properties | Length: 292aa MW: 33318.4 Da PI: 7.502 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55 | 1.9e-17 | 24 | 71 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lvd++++ G gtW++ ++ g++R++k+c++rw +yl XP_024972462.1 24 KGSWTPEEDKILVDYITKNGHGTWRSFPKLAGLRRCGKSCRLRWTNYL 71 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 53 | 7.8e-17 | 77 | 122 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE++ + +++ ++G++ W++Ia++++ gRt++++k++w+++l XP_024972462.1 77 RGAFSSEEEQTIFQLHSLHGNK-WAAIASRLP-GRTDNEIKNFWNSHL 122 89********************.*********.************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence |
MSKRGRKEEK MGRAPCCNKG EVKKGSWTPE EDKILVDYIT KNGHGTWRSF PKLAGLRRCG 60 KSCRLRWTNY LRPDIKRGAF SSEEEQTIFQ LHSLHGNKWA AIASRLPGRT DNEIKNFWNS 120 HLRKRIPNKN GTLQTNPPSK STDIKFTLPP WENIRKEAEA ETRLPMDPML LSPATGISDG 180 NNFLHEWGSG DEEPFQKHMD RDKVACLIPT PRPIKFESDS VVTVQAGPYF AGTSTSESCD 240 QGIKEHRRFF KEEAEEITNA ESQNSYEPEN ASDITLDLLL DFPNDGEYLQ YV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61250.1 | 6e-73 | MYB family protein |