PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024972452.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 292aa MW: 33318.4 Da PI: 7.502

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024972452.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55	1.9e-17	24	71	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lvd++++ G gtW++ ++ g++R++k+c++rw +yl XP_024972452.1 24 KGSWTPEEDKILVDYITKNGHGTWRSFPKLAGLRRCGKSCRLRWTNYL 71 799*******************************************97 PP
2	Myb_DNA-binding	53	7.8e-17	77	122	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE++ + +++ ++G++ W++Ia++++ gRt++++k++w+++l XP_024972452.1 77 RGAFSSEEEQTIFQLHSLHGNK-WAAIASRLP-GRTDNEIKNFWNSHL 122 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence
MSKRGRKEEK MGRAPCCNKG EVKKGSWTPE EDKILVDYIT KNGHGTWRSF PKLAGLRRCG 60 KSCRLRWTNY LRPDIKRGAF SSEEEQTIFQ LHSLHGNKWA AIASRLPGRT DNEIKNFWNS 120 HLRKRIPNKN GTLQTNPPSK STDIKFTLPP WENIRKEAEA ETRLPMDPML LSPATGISDG 180 NNFLHEWGSG DEEPFQKHMD RDKVACLIPT PRPIKFESDS VVTVQAGPYF AGTSTSESCD 240 QGIKEHRRFF KEEAEEITNA ESQNSYEPEN ASDITLDLLL DFPNDGEYLQ YV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61250.1	6e-73	MYB family protein