PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024971912.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

GRF

Protein Properties

Length: 451aa MW: 48967.7 Da PI: 9.313

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024971912.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.6	1.2e-24	170	214	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e XP_024971912.1 170 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 214 79****************************************985 PP
2	QLQ	57.9	3e-20	103	139	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FTa+Q+++L++Q+l+yKy+ n+PvP++Ll +i+k XP_024971912.1 103 GPFTASQWMELEHQALIYKYITVNAPVPSNLLIPIRK 139 59*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence
MDFGGLYDLD PNPKCYVQVG SGFKQERSLS ATAHNQDEWR DLKLPKITQQ DISKAMLRSN 60 TTSHSAYSDS QNMLSFSSPN TLTLPYYAPN TAGSGSLMAG VRGPFTASQW MELEHQALIY 120 KYITVNAPVP SNLLIPIRKA LETAAFSGTH LRNTTYGWGA FHLGFSNSSD PEPGRCRRTD 180 GKKWRCSRDA VADQKYCERH MNRGRHRSRK PVEGQTGHSV SNGPTTTAAV AAAKVSASAA 240 VVTTTSTIVS HLHQLSSSNR MQSFLNKGNE KTEDAIGHSS IGLKQNPSEF GLVCSDSLLN 300 PLQKNEDGGH KSQNSLRQFM DNWPQSDRTQ LSISIPIPPS DFMSSTSSPI SERLNLSPLR 360 MGLGVGNNSE RSQWIPVSWE SSMGGPLGEV LNNSPSALSL MTDGWESSQQ MTLSPTGVLQ 420 KRAFGSLSNS STGSSPRTGS TTLMTSSLPL M

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence

MDFGGLYDLD PNPKCYVQVG SGFKQERSLS ATAHNQDEWR DLKLPKITQQ DISKAMLRSN  60
TTSHSAYSDS QNMLSFSSPN TLTLPYYAPN TAGSGSLMAG VRGPFTASQW MELEHQALIY  120
KYITVNAPVP SNLLIPIRKA LETAAFSGTH LRNTTYGWGA FHLGFSNSSD PEPGRCRRTD  180
GKKWRCSRDA VADQKYCERH MNRGRHRSRK PVEGQTGHSV SNGPTTTAAV AAAKVSASAA  240
VVTTTSTIVS HLHQLSSSNR MQSFLNKGNE KTEDAIGHSS IGLKQNPSEF GLVCSDSLLN  300
PLQKNEDGGH KSQNSLRQFM DNWPQSDRTQ LSISIPIPPS DFMSSTSSPI SERLNLSPLR  360
MGLGVGNNSE RSQWIPVSWE SSMGGPLGEV LNNSPSALSL MTDGWESSQQ MTLSPTGVLQ  420
KRAFGSLSNS STGSSPRTGS TTLMTSSLPL M

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	4e-67	GRF family protein