PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024971778.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 509aa MW: 54130.8 Da PI: 8.5368

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024971778.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	59	81	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_024971778.1 59 FVCEICNKGFQRDQNLQLHRRGH 81 89*******************88 PP
2	zf-C2H2	15.7	4.2e-05	135	157	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ XP_024971778.1 135 WKCERCSKKYAVQSDWKAHMKTC 157 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence
MAVSATSVEG TECSSGGNQI VAAPEIQPMK KKRNLPGMPD PDAEVIALSP TTLLATNRFV 60 CEICNKGFQR DQNLQLHRRG HNLPWKLKQR DGKEIRKRVY VCPEKSCIHH DPSRALGDLT 120 GIKKHFSRKH GEKKWKCERC SKKYAVQSDW KAHMKTCGTK EYRCDCGTLF SRRDSFITHR 180 AFCDALAQES ARSQTQNVVI SNSDHHSHRQ ETAKVEVTVL PPSCSPPPPP LTPSTGVLSP 240 VPSVHSSEVP EKATGVLQHQ KGAVAEAEAA EKCLATATAT TTTTASGGST SSGNNIVTDN 300 TGVFASIFAS PSVLPPSQSS PASYSNLVCG VVETDRNAKV EPMSLSLSSS LYRSSTAAPS 360 LFPPPDQTLH RQYVQPALSA TALLQKAAQM GATSSNTSFL HALGLAPPPP SSSADQYQET 420 SIGQWSNIQS KQERNDNSGI GRDQMLMGPP APTTLDFLGL GMGGGTGGSS GGYSAFLSSL 480 GASVSGGVSF GGVQNKEWDD SGDKKPALL

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence

MAVSATSVEG TECSSGGNQI VAAPEIQPMK KKRNLPGMPD PDAEVIALSP TTLLATNRFV  60
CEICNKGFQR DQNLQLHRRG HNLPWKLKQR DGKEIRKRVY VCPEKSCIHH DPSRALGDLT  120
GIKKHFSRKH GEKKWKCERC SKKYAVQSDW KAHMKTCGTK EYRCDCGTLF SRRDSFITHR  180
AFCDALAQES ARSQTQNVVI SNSDHHSHRQ ETAKVEVTVL PPSCSPPPPP LTPSTGVLSP  240
VPSVHSSEVP EKATGVLQHQ KGAVAEAEAA EKCLATATAT TTTTASGGST SSGNNIVTDN  300
TGVFASIFAS PSVLPPSQSS PASYSNLVCG VVETDRNAKV EPMSLSLSSS LYRSSTAAPS  360
LFPPPDQTLH RQYVQPALSA TALLQKAAQM GATSSNTSFL HALGLAPPPP SSSADQYQET  420
SIGQWSNIQS KQERNDNSGI GRDQMLMGPP APTTLDFLGL GMGGGTGGSS GGYSAFLSSL  480
GASVSGGVSF GGVQNKEWDD SGDKKPALL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-112	C2H2 family protein