PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_024971479.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 217aa MW: 26066.2 Da PI: 9.3931 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.4 | 1.6e-18 | 4 | 49 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed++l ++v+q+G+++W++Ia++++ gR++k+c++rw++ XP_024971479.1 4 RGHWRPSEDQKLRQLVQQYGPHNWNAIAEKLQ-GRSGKSCRLRWFNQ 49 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 58.1 | 2.1e-18 | 56 | 99 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l+ +++++G++ W+ Ia+ ++ gRt++ +k++w+ XP_024971479.1 56 RSPFTEEEEERLLAYHREFGNR-WANIAKLFP-GRTDNAVKNHWHV 99 789*******************.*********.***********96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 217 aa Download sequence |
MCSRGHWRPS EDQKLRQLVQ QYGPHNWNAI AEKLQGRSGK SCRLRWFNQL DPKINRSPFT 60 EEEEERLLAY HREFGNRWAN IAKLFPGRTD NAVKNHWHVI MARRHRERST RMYRRITATT 120 DTDTNHLFTE RCRYTNFPYE ISRNIASHLQ LSKNLVHQFK IHEDKKDQSV EFYNFLPVNT 180 DSNKSEVIDH AKKDEVEVEQ EATEQQRRDV VPFIDFL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G17950.1 | 2e-82 | MYB family protein |