PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024971452.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HD-ZIP
Protein Properties Length: 842aa    MW: 92435.3 Da    PI: 6.0785
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024971452.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.6e-182886357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_024971452.1 28 KYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 86
                    5679*****************************************************97 PP
2START157.41.1e-491663732204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  ++++ ve+l d+   W ++++  e+   +  g  g+++l 
  XP_024971452.1 166 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIVEILKDRT-SWFRDCRNLEVFTMLPAGngGTIELV 259
                     7899******************************************************9999999999.***************99999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++ +a+++l+p Rdf+++Ry+ +l  g++v++++S++     p+   + ++vR+e+lpSg+li+p+++g+s +++v+h +l++++++++lr+l+
  XP_024971452.1 260 YTQVYAPTTLAPaRDFWTLRYTTSLDNGSLVVCERSLSGSGGGPNaaaTTQFVRGEMLPSGYLIRPCDGGGSIIHIVDHLNLEAWSVPEVLRPLY 354
                     ***************************************9999999999********************************************** PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     +s+ + ++k++ a+l++ +
  XP_024971452.1 355 ESSKVVAQKMTIAALRYIR 373
                     **************99865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    
MAMVAQHQQH RETTSSSSSF KHQLDNGKYV RYTAEQVEAL ERVYAECPKP SSLRRQQLIR  60
ECPILSNIEP KQIKVWFQNR RCREKQRKEA SRLQTVNRKL SAMNKLLMEE NDRLQKQVSQ  120
LVYENGYMRQ QLHTNSAVTD ASCESVVTTP QHSLRDANNP AGLLSIAEET LAEFLSKATG  180
TAVDWVQMPG MKPGPDSVGI FAISQSCSGV AARACGLVSL EPTKIVEILK DRTSWFRDCR  240
NLEVFTMLPA GNGGTIELVY TQVYAPTTLA PARDFWTLRY TTSLDNGSLV VCERSLSGSG  300
GGPNAAATTQ FVRGEMLPSG YLIRPCDGGG SIIHIVDHLN LEAWSVPEVL RPLYESSKVV  360
AQKMTIAALR YIRQIAQESS GEVTYGLGRQ PAVLRTLSQR LSRGFNDAIN GFNDDGWSLM  420
NCDGAEDVIV AINSTKNLST STNPSNSLSF LGGVLCAKAS MLFQNVPAAV LVRFLREHRS  480
EWADFNVDAY SAASVKASPY GNPGMRPTRF TGSQIIMPLG QTIEHEEMLE VIRLEGHALG  540
QEDPFVSRDI HLLQLCSGID ENAVGACSEL IFAPIDEMFP DDAPLIPSGF RIIPLDPKSD  600
ALVTTHRTLD LTSSLEVGPS TNQGTSDTLG CQNTRSVLTI AFQFPFENNL ADSVATMARQ  660
YVRSVINSVQ RVAMAISPSG LSPSVSPKLS PGSPEAVTLA QWICHSYTYH LGVDLLTSSS  720
VVGDSLLKDL WQHQDAILCC SLKSLPVFIF ANQAGLDMLE TTLVALQDIT LDKMFDEAGR  780
KALFPEFAKI MQQGFAYLPG GICMSTMGRH ISYEQAIAWK VLAADETTVH CLAFSFVNWS  840
FV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein