PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_024971334.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 226aa MW: 25429.4 Da PI: 9.6689 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.8 | 2.5e-18 | 36 | 81 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+ eEd++l + v+++G+++W++I++++ gR++k+c++rw + XP_024971334.1 36 KGPWSSEEDKILTRFVQRYGPRNWSLISKYIK-GRSGKSCRLRWCNQ 81 79*****************************9.***********985 PP | |||||||
2 | Myb_DNA-binding | 52.7 | 9.9e-17 | 90 | 132 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ed+ ++ a++q+G++ W+tIar + gRt++ +k++w++ XP_024971334.1 90 PFSPAEDQTILAAHAQYGNR-WATIARLLV-GRTDNAVKNHWNST 132 79******************.*********.***********986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 226 aa Download sequence |
MEAFINRCSS SSSDHSSSSD SSHKTLKPNK LHATIKGPWS SEEDKILTRF VQRYGPRNWS 60 LISKYIKGRS GKSCRLRWCN QLSPNVEHRP FSPAEDQTIL AAHAQYGNRW ATIARLLVGR 120 TDNAVKNHWN STLKRRHQSA VSEREVLGDD GGDFKMISLS TNFPTSGSLA ADEYDPMTTL 180 SLAPPGMRES RRESFPAGFW DVMKDVIAKE VREYVTTSFP DTSGFQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G50060.1 | 1e-58 | MYB family protein |