PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024971158.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

TCP

Protein Properties

Length: 390aa MW: 41950.2 Da PI: 7.1201

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024971158.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	130.9	1.2e-40	73	218	2	129
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s + XP_024971158.1 73 APKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSVPsqlrsgy 167 789******************************************************************99987777777777555556677778 PP TCP 89 ..................kaaksaakskksqksaasalnlakesrakarararertrek 129 +++++s+++ ln+ ++ + +a+++tr++ XP_024971158.1 168 fnpnftfpqnrnlfpgigL--------SSTENSSSNLLNFGSATNLHQMLQAKQETRDN 218 8888889886444444440........44444444444444444433333333333332 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MDGGDDHFHH RPNFPFQLLE KKDDEACSSS ANVSATSGYP TPPTDTNNNP PLLSNNTSNL 60 QITTTLEPSK KLAPKRTSTK DRHTKVDGRG RRIRMPALCA ARVFQLTREL GHKTDGETIE 120 WLLQQAEPAV IAATGTGTIP ANFTSLNISL RSSGSSMSVP SQLRSGYFNP NFTFPQNRNL 180 FPGIGLSSTE NSSSNLLNFG SATNLHQMLQ AKQETRDNSV ELSETEESIG RKRRHPTEPE 240 LPSQHQQQMG NYLLQSSSAS MAANHASIPA NFWMVANSNQ HQSMSGDPIW TFPTVNNTAL 300 YRGAVSTGLH FMNFPTPVAL MPSQQLASGV GGNSGNGGGG GFSEGQLSML TGLNPYRPIF 360 GPGASEQQAS GSQSHHGGGD DPHDTTSHHS

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MDGGDDHFHH RPNFPFQLLE KKDDEACSSS ANVSATSGYP TPPTDTNNNP PLLSNNTSNL  60
QITTTLEPSK KLAPKRTSTK DRHTKVDGRG RRIRMPALCA ARVFQLTREL GHKTDGETIE  120
WLLQQAEPAV IAATGTGTIP ANFTSLNISL RSSGSSMSVP SQLRSGYFNP NFTFPQNRNL  180
FPGIGLSSTE NSSSNLLNFG SATNLHQMLQ AKQETRDNSV ELSETEESIG RKRRHPTEPE  240
LPSQHQQQMG NYLLQSSSAS MAANHASIPA NFWMVANSNQ HQSMSGDPIW TFPTVNNTAL  300
YRGAVSTGLH FMNFPTPVAL MPSQQLASGV GGNSGNGGGG GFSEGQLSML TGLNPYRPIF  360
GPGASEQQAS GSQSHHGGGD DPHDTTSHHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	4e-54	TCP family protein