PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024970812.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HSF

Protein Properties

Length: 349aa MW: 38250.6 Da PI: 5.5128

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024970812.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	117.7	7.1e-37	29	119	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y+++ed+++++++sw+e+g++f+v++++efak++LpkyFkh+nf+SFvRQLn+YgF+kv ++ weF+++ F++g+k+ll++ XP_024970812.1 29 FLTKTYQLVEDKSIDDVVSWNEDGSTFIVWNPTEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFRRGEKRLLCD 114 9***************************************************************99.........************** PP XXXXX CS HSF_DNA-bind 97 ikrkk 101 i+r+k XP_024970812.1 115 IQRRK 119 *98 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MPPPPPPLER SGLESPAGDT ASRSLPTPFL TKTYQLVEDK SIDDVVSWNE DGSTFIVWNP 60 TEFAKDLLPK YFKHNNFSSF VRQLNTYGFR KVVPDRWEFS NDCFRRGEKR LLCDIQRRKI 120 ASAPPAQAPV PSPAVAAPPL VTLAALPPAT VSPSDSGEEQ VLSSNSSRGA TTNLSRETTA 180 SGGANAELAG ENERLKRENV QLNKELSQMK NLCSNIYVMM SSYATNKPSD GSSSQPPPQQ 240 AATTTVKPLD LLPLKRLAEE YMGNGCRGGG GNHREAAEHE EISPRLFGVP IGVKRSREGG 300 SGEEAEQYNE LQLQQPGVDV KSEPLDHNEN GSSVDNHEST WMMKRSDRN

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MPPPPPPLER SGLESPAGDT ASRSLPTPFL TKTYQLVEDK SIDDVVSWNE DGSTFIVWNP  60
TEFAKDLLPK YFKHNNFSSF VRQLNTYGFR KVVPDRWEFS NDCFRRGEKR LLCDIQRRKI  120
ASAPPAQAPV PSPAVAAPPL VTLAALPPAT VSPSDSGEEQ VLSSNSSRGA TTNLSRETTA  180
SGGANAELAG ENERLKRENV QLNKELSQMK NLCSNIYVMM SSYATNKPSD GSSSQPPPQQ  240
AATTTVKPLD LLPLKRLAEE YMGNGCRGGG GNHREAAEHE EISPRLFGVP IGVKRSREGG  300
SGEEAEQYNE LQLQQPGVDV KSEPLDHNEN GSSVDNHEST WMMKRSDRN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62020.1	5e-88	HSF family protein