PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024970620.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 524aa MW: 58342.5 Da PI: 4.6342

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024970620.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.9	7.1e-52	20	146	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 ppGfrFhPtdeel+ +yLk+k+ g++l+l ++i evd+yk++P++Lp + k ++++++w+fFs+rd+ky++g r+nrat +gyWkatgkd+ +++ XP_024970620.1 20 PPGFRFHPTDEELILYYLKRKICGRPLKL-DIIGEVDVYKWDPEELPgQsKWNTGDRQWFFFSPRDRKYPNGGRSNRATVRGYWKATGKDRIIKC 113 9**************************.99**********96348888999*********************************9 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ vg+kktLv+y+gra +g++tdWvmhey+l XP_024970620.1 114 -NSRSVGIKKTLVYYQGRAASGKRTDWVMHEYTL 146 .999**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence
MGSESIISKS SSSSREKFFP PGFRFHPTDE ELILYYLKRK ICGRPLKLDI IGEVDVYKWD 60 PEELPGQSKW NTGDRQWFFF SPRDRKYPNG GRSNRATVRG YWKATGKDRI IKCNSRSVGI 120 KKTLVYYQGR AASGKRTDWV MHEYTLDEEE LKRCKYAQEY FALYKVFKKS GPGPKNGEQY 180 GAPFVEEEWA DDYDYLEGDA LLVQTISNLV NEPKLKSGIM VEPDIVPPLA QINPINGEKE 240 SQNTLLACSS SQVDKSIAMG PREKLLDVQP SSDLAQSANK PSEITTVEEL QPLVVTDDFL 300 EMDDLITPQP AFRNSEPLLL DNLQFADFDG FCEFDFYNDS TGINEMNPFE SQQIQQPCYM 360 SNLDYGMENS GMHSYSNAIG SEAINTEFQM GSDDFMGAQA TDFASSAPSG VITDGKSGNP 420 NSGVNQCGEG DGTESWFSSA LWAFVESVPS SPASALESSA LVNKAFERMP SFSRISKANA 480 ATRRVERSSR SIRDIAFISV LGVVLAIFCV LLGTSIKLLG RCVL

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence

MGSESIISKS SSSSREKFFP PGFRFHPTDE ELILYYLKRK ICGRPLKLDI IGEVDVYKWD  60
PEELPGQSKW NTGDRQWFFF SPRDRKYPNG GRSNRATVRG YWKATGKDRI IKCNSRSVGI  120
KKTLVYYQGR AASGKRTDWV MHEYTLDEEE LKRCKYAQEY FALYKVFKKS GPGPKNGEQY  180
GAPFVEEEWA DDYDYLEGDA LLVQTISNLV NEPKLKSGIM VEPDIVPPLA QINPINGEKE  240
SQNTLLACSS SQVDKSIAMG PREKLLDVQP SSDLAQSANK PSEITTVEEL QPLVVTDDFL  300
EMDDLITPQP AFRNSEPLLL DNLQFADFDG FCEFDFYNDS TGINEMNPFE SQQIQQPCYM  360
SNLDYGMENS GMHSYSNAIG SEAINTEFQM GSDDFMGAQA TDFASSAPSG VITDGKSGNP  420
NSGVNQCGEG DGTESWFSSA LWAFVESVPS SPASALESSA LVNKAFERMP SFSRISKANA  480
ATRRVERSSR SIRDIAFISV LGVVLAIFCV LLGTSIKLLG RCVL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34190.1	1e-119	NAC family protein