PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024970566.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB_related
Protein Properties Length: 347aa    MW: 37728.7 Da    PI: 8.997
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024970566.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding445.1e-1498142347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + ++lG+g+W+ Iar   + Rt+ q+ s+ qky
   XP_024970566.1  98 PWTEEEHRLFLLGLQKLGKGDWRGIARNYVLSRTPTQVASHAQKY 142
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    
MTRRCSHCSN NGHNSRTCPS RAGGVKLFGV RLTDGSIMKK SASMGNLSAL YHSSSPAAVS  60
PNPSSPATSD PVEGYLSDDP AHASCSAKRR ADRKKGTPWT EEEHRLFLLG LQKLGKGDWR  120
GIARNYVLSR TPTQVASHAQ KYFIRQCSAT RRKRRSSLFD MAPDMAAEPP EDHFMLPPAI  180
GTDHTEKTQC SLKLSLKPDS DQSMDTASPI EMKEAMIKEE TSTTVSELPP IIPTFYPAYI  240
PIPFPVWPST MTPLEEPTNN NDNNKGADPS HHRVLKPIPI LSKEPMNLDE LVGMSSQLSL  300
KETEPSPLSL KLLAEPSRQS AFHASTPAVG NGGSGVNKGG SNGFRPI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.16e-76MYB_related family protein