PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024970508.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GATA
Protein Properties Length: 326aa    MW: 35811.4 Da    PI: 6.5067
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024970508.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.29.7e-18240273134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  XP_024970508.1 240 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 273
                     99*****************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    
MAGQTFTEEI DCGSFFDHID DFIEFPPVTD TTLNSVNCES FSNIWTNNSD ELQVSDPIFS  60
DSNCASALSA ELAVPYEDIV QLEWLSNFVE DSFSGGGMTI NKENVSVKKE PLVVANYPFQ  120
MSSPVSVLES SSSSSSSSSC SGSGKLIPLS PTHRGPQRAR SKRPRPPAFN PRAAIKLLST  180
SNLVPVPIPM ESENPLESHS GGPDQKKRKK KPKKPDALFN PEDKTQNQSQ NPGGQGVRKC  240
MHCEITKTPQ WRAGPMGPKT LCNACGVRYK SGRLFPEYRP AASPTFVPSL HSNSHKKVVE  300
MRNKCMPDEV PEAELIPNMN PPMDYM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162166KRPRP
2206210KKRKK
3206214KKRKKKPKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.27e-42GATA family protein