PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024970428.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 348aa MW: 37844.5 Da PI: 9.9304

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024970428.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.4	4.6e-31	276	333	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ve++ +dp ++++tYegeHnh+ XP_024970428.1 276 DDYSWRKYGQKPIKGSPHPRGYYKCSSLrGCPARKHVEKALDDPAMLIVTYEGEHNHS 333 99**********************998**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MAVDLMNAYR NGALLTKMDE NSVQEAAAAG LQSVENLIRL LSSQNQSYQT NTTSSSSSSP 60 PADSSATTDY VAVADVAVTK FKKFISLLDR NRTGHARFRR GPVCNPPVSQ EKPALLAAGV 120 TNPHHHQTVE KVYSPAPIQQ RLPPSSQTIH HHPLVKSGSF DRKDFPVTTI NFAATAAAAA 180 SQANSFMSSL TGDTDSFQPS MSSGFQITNM SQVSSAGQPN MSSSSFKRKC NSMDDSHTKC 240 ANSSGRCHCS KKRKSKMRRI VRVPAISMKM ADIPPDDYSW RKYGQKPIKG SPHPRGYYKC 300 SSLRGCPARK HVEKALDDPA MLIVTYEGEH NHSHNVNDTT GAIVLESS

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MAVDLMNAYR NGALLTKMDE NSVQEAAAAG LQSVENLIRL LSSQNQSYQT NTTSSSSSSP  60
PADSSATTDY VAVADVAVTK FKKFISLLDR NRTGHARFRR GPVCNPPVSQ EKPALLAAGV  120
TNPHHHQTVE KVYSPAPIQQ RLPPSSQTIH HHPLVKSGSF DRKDFPVTTI NFAATAAAAA  180
SQANSFMSSL TGDTDSFQPS MSSGFQITNM SQVSSAGQPN MSSSSFKRKC NSMDDSHTKC  240
ANSSGRCHCS KKRKSKMRRI VRVPAISMKM ADIPPDDYSW RKYGQKPIKG SPHPRGYYKC  300
SSLRGCPARK HVEKALDDPA MLIVTYEGEH NHSHNVNDTT GAIVLESS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23320.1	7e-80	WRKY family protein