PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024970174.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 512aa MW: 57447 Da PI: 5.1052

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024970174.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160.8	5.4e-50	9	137	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lp+G+rF+Ptdeelv++yL+ k++g + e+ ++i+evd++k ePwdLp + +++ ++ew+fF+++d+ky++g+r+nrat sgyWkatgkd++++ XP_024970174.1 9 LPVGYRFRPTDEELVNHYLRLKINGYDREV-SCIQEVDVCKKEPWDLPglSVIESIDNEWFFFCPKDRKYQNGQRSNRATVSGYWKATGKDRTIK 102 799**********************999.89***********6447788899********************************9 PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyr 127 ++ +g+++g kktLvfy+grapkge+t+Wv+hey+ XP_024970174.1 103 TNkGGSVIGRKKTLVFYTGRAPKGERTHWVIHEYS 137 9867889*************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence
MEPIPANSLP VGYRFRPTDE ELVNHYLRLK INGYDREVSC IQEVDVCKKE PWDLPGLSVI 60 ESIDNEWFFF CPKDRKYQNG QRSNRATVSG YWKATGKDRT IKTNKGGSVI GRKKTLVFYT 120 GRAPKGERTH WVIHEYSPTQ KELDGTHPGQ NPFVLCRLFK KHDGKDEIPE SFDCADVASP 180 PSIVKPSPED VQSEPVTPNF LNVQTHVQPS RTETLKVEDY DRTNDSLVFL DCHDMDPSKD 240 LTPYPELEDD LQVFWDPSPQ NLDSKIFSPL HSHMQLEFGS SYLGGNNEIG NYGNQHFEMQ 300 DEYGTNAEEL LSFIDEPDQF SFDDSGYKGD SFAQPSMPKV DIKDYGYSSE SDGEVIQVQP 360 IHSGFSTGGP VNMGQQAYHW PEGFENGNGG NSALQSIMTI EKIPPEESCS SSSINNSGTG 420 IKIRSRGTQG IGNGPSFANQ GTAQRRIRLQ MKPRNLIEKE DEGKQKENYS DAASMNKGVK 480 SRMSGVGLRM RKVIVVVGFC VGIASLWKWL ID

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence

MEPIPANSLP VGYRFRPTDE ELVNHYLRLK INGYDREVSC IQEVDVCKKE PWDLPGLSVI  60
ESIDNEWFFF CPKDRKYQNG QRSNRATVSG YWKATGKDRT IKTNKGGSVI GRKKTLVFYT  120
GRAPKGERTH WVIHEYSPTQ KELDGTHPGQ NPFVLCRLFK KHDGKDEIPE SFDCADVASP  180
PSIVKPSPED VQSEPVTPNF LNVQTHVQPS RTETLKVEDY DRTNDSLVFL DCHDMDPSKD  240
LTPYPELEDD LQVFWDPSPQ NLDSKIFSPL HSHMQLEFGS SYLGGNNEIG NYGNQHFEMQ  300
DEYGTNAEEL LSFIDEPDQF SFDDSGYKGD SFAQPSMPKV DIKDYGYSSE SDGEVIQVQP  360
IHSGFSTGGP VNMGQQAYHW PEGFENGNGG NSALQSIMTI EKIPPEESCS SSSINNSGTG  420
IKIRSRGTQG IGNGPSFANQ GTAQRRIRLQ MKPRNLIEKE DEGKQKENYS DAASMNKGVK  480
SRMSGVGLRM RKVIVVVGFC VGIASLWKWL ID

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24590.2	7e-88	NAC family protein