PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024969092.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 292aa MW: 32143.7 Da PI: 8.913

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024969092.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.5	1.1e-11	5	52	2	46
SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqk 46 ++W++eEd+ + +a++ + + +W+tIa+ ++ ++t ++k ++q XP_024969092.1 5 KAWSKEEDKAFENAIANHWNQdskeQWDTIASLVP-TKTIPELKQHYQL 52 58*******************************.*********96 PP
2	Myb_DNA-binding	38.3	3.1e-12	130	174	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++G+g+W++I+r Rt+ q+ s+ qky XP_024969092.1 130 PWTEEEHRLFLLGLDKFGKGDWRSISRNYVISRTPTQVASHAQKY 174 7***************************89**********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence
MSSSKAWSKE EDKAFENAIA NHWNQDSKEQ WDTIASLVPT KTIPELKQHY QLLTEDVDDI 60 EAGLIPIPKY LGEESSSSST KDNQNHHGSN SNRRSSSCNY ANGFSAFGHD SNPAGKGNSR 120 AEQERRKGIP WTEEEHRLFL LGLDKFGKGD WRSISRNYVI SRTPTQVASH AQKYFIRLNS 180 MNRDRRRTSI HDITSVNNGD VSSHQIPITG QSGGTNPSNG STVGAPMKHR PHQPSMPPGM 240 GMYGAPMGHP VAAAPGHMPS AVGTPVMLPH SHHPPYVMPV AYPMAPPPTM HQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49010.1	1e-66	MYB family protein