PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024968997.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 381aa MW: 42665 Da PI: 6.9882

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024968997.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.7	9.2e-53	31	159	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL+ kv + +++ i+evd++++ePw+Lp+ +k +e+ewyf+s rd+ky+tg r+nrat++gyWkatgkd+ev+s+ XP_024968997.1 31 LPPGFRFHPTDEELITFYLASKVFSFSFSG-VDIAEVDLNRCEPWELPEVAKMGEREWYFYSLRDRKYPTGLRTNRATSAGYWKATGKDREVYSS 124 79*********************99988.34***********8888999***********************************9 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++l g+kktLvfykgrap+gekt+Wvmheyrl XP_024968997.1 125 gsGRTLLGMKKTLVFYKGRAPHGEKTKWVMHEYRL 159 767778*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MMLGIEEILC ELGGGGCGGA GGGEAEQQGG LPPGFRFHPT DEELITFYLA SKVFSFSFSG 60 VDIAEVDLNR CEPWELPEVA KMGEREWYFY SLRDRKYPTG LRTNRATSAG YWKATGKDRE 120 VYSSGSGRTL LGMKKTLVFY KGRAPHGEKT KWVMHEYRLD GDFSYRHTCK DEWVICRIFH 180 KIGEKKTNGG QNYPHFKHRQ STIESSPSSS TPTTTTITRK PFHEGTTPLM HHHSNPPPPP 240 PPLQNPFLFG DNHHEIHDQE LKSLLNLPSF PTIQTTPNPT LVKTLLPNQP ITTPVAKQCK 300 TEAHFTIPQL PDANLHRWGT DYIPPPPLFP FQQEDLGEME YYFNTSGGGG VTRLGAQGTS 360 DHSNEAMSFD RVGLNQLLSS I

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MMLGIEEILC ELGGGGCGGA GGGEAEQQGG LPPGFRFHPT DEELITFYLA SKVFSFSFSG  60
VDIAEVDLNR CEPWELPEVA KMGEREWYFY SLRDRKYPTG LRTNRATSAG YWKATGKDRE  120
VYSSGSGRTL LGMKKTLVFY KGRAPHGEKT KWVMHEYRLD GDFSYRHTCK DEWVICRIFH  180
KIGEKKTNGG QNYPHFKHRQ STIESSPSSS TPTTTTITRK PFHEGTTPLM HHHSNPPPPP  240
PPLQNPFLFG DNHHEIHDQE LKSLLNLPSF PTIQTTPNPT LVKTLLPNQP ITTPVAKQCK  300
TEAHFTIPQL PDANLHRWGT DYIPPPPLFP FQQEDLGEME YYFNTSGGGG VTRLGAQGTS  360
DHSNEAMSFD RVGLNQLLSS I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76420.1	4e-90	NAC family protein